RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PPP4R3AQ6IN85 833 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 PRRT2Q7Z6L0 340 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 ERO1BQ86YB8 467 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 REXO1Q8N1G1 1221 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 C4orf32Q8N8J7 132 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 JMYQ8N9B5 988 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 CUL5Q93034 780 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 ZKSCAN4Q969J2 545 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 MBOAT7Q96N66 472 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 NIFKQ9BYG3 293 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 FTOQ9C0B1 505 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS29-203ENST00000546588 PICK1Q9NRD5 415 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 PPP1R9AQ9ULJ8 1098 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 NOL7Q9UMY1 257 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 DDX49Q9Y6V7 483 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 ABCB11O95342 1321 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 THSD7BQ9C0I4 1608 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 EDIL3O43854 480 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 CUTAO60888 179 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 FOSP01100 380 aaPredicted RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 PDGFAP04085 211 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 PCSK2P16519 638 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 CMA1P23946 247 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 GPC1P35052 558 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 SLC16A2P36021 539 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 ADCY7P51828 1080 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 MRPL12P52815 198 aaKnown RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 PPIL2Q13356 520 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 SNW1Q13573 536 aaKnown RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 NONOQ15233 471 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS29-203ENST00000546588 NAALADL2Q58DX5 795 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 PRICKLE2Q7Z3G6 844 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 FBXO11Q86XK2 927 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 HOMER1Q86YM7 354 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 GPR152Q8TDT2 470 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 FERMT2Q96AC1 680 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 NUP88Q99567 741 aaPredicted RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 NAP1L4Q99733 375 aaKnown RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 SLF1Q9BQI6 1058 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 DDX19AQ9NUU7 478 aaKnown RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 TMEM63CQ9P1W3 806 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 FBXO2Q9UK22 296 aaPredicted RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 PCDHA7Q9UN72 937 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 PCDHB6Q9Y5E3 794 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 PCDHA1Q9Y5I3 950 aa9.56□□□□□ -0.88
VPS29-203ENST00000546588 SRPRBQ9Y5M8 271 aaKnown RBP9.56□□□□□ -0.88
VPS29-203ENST00000546588 MGAMO43451 1857 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 ARID2Q68CP9 1835 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CYP3A7-CYP3A51PA0A087WV96 503 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 TRIM75PA6NK02 468 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 IGHA2P01877 340 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 RHOQP17081 205 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CYP3A7P24462 503 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CIITAP33076 1130 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 HSD17B4P51659 736 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 USP11P51784 963 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 FAM160A1Q05DH4 1040 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 SPP2Q13103 211 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 MOGSQ13724 837 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 GNL2Q13823 731 aaKnown RBP9.55□□□□□ -0.88
VPS29-203ENST00000546588 STK38Q15208 465 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 DBN1Q16643 649 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 TTC38Q5R3I4 469 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 PRAMEF18Q5VWM3 479 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 RESP18Q5W5W9 173 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CATSPERGQ6ZRH7 1159 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 FAM43BQ6ZT52 329 aaPredicted RBP9.55□□□□□ -0.88
VPS29-203ENST00000546588 PIK3AP1Q6ZUJ8 805 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 NEK8Q86SG6 692 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 EXOC8Q8IYI6 725 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 FMR1NBQ8N0W7 255 aaPredicted RBP9.55□□□□□ -0.88
VPS29-203ENST00000546588 SPICE1Q8N0Z3 855 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 SREK1Q8WXA9 508 aaKnown RBP9.55□□□□□ -0.88
VPS29-203ENST00000546588 COA7Q96BR5 231 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 DRC1Q96MC2 740 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 TIGD1Q96MW7 591 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 FEZ1Q99689 392 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 ENAMQ9NRM1 1142 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 SLC45A1Q9Y2W3 748 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CSADQ9Y600 493 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 RPTORQ8N122 1335 aa9.55□□□□□ -0.88
VPS29-203ENST00000546588 CCDC194A0A1B0GVG4 234 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 VWA5AO00534 786 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 CYP3A4P08684 503 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 GCFC2P16383 781 aaKnown RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 SREBF1P36956 1147 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 PLA2G4AP47712 749 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 CCDC183Q5T5S1 534 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 ARMC9Q7Z3E5 817 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 CCDC84Q86UT8 332 aaPredicted RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 TREML1Q86YW5 311 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 GJD3Q8N144 294 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 MRPS27Q92552 414 aaKnown RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 ANP32BQ92688 251 aaKnown RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 SYAP1Q96A49 352 aaPredicted RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 ALKBH8Q96BT7 664 aaKnown RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 FUCA2Q9BTY2 467 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 RPAP3Q9H6T3 665 aaPredicted RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 PSTPIP2Q9H939 334 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 ZNF214Q9UL59 606 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms