RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 IGHA1P01876 353 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TPM2P07951 284 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 PLCG1P19174 1290 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 BMP6P22004 513 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 EEF1GP26641 437 aaKnown RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF76P36508 570 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ECE1P42892 770 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 HSD17B4P51659 736 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TERF1P54274 439 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 BACE1P56817 501 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 JAG1P78504 1218 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L24Q0WX57 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 NR1H3Q13133 447 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 PAK1Q13153 545 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 CLN3Q13286 438 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TRIM14Q14142 442 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 UBE2SQ16763 222 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TPD52L1Q16890 204 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TBC1D10BQ4KMP7 808 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L6PQ6QN14 398 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ARHGAP27Q6ZUM4 889 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 UNC13DQ70J99 1090 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 CYP2U1Q7Z449 544 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF280CQ8ND82 737 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ETNPPLQ8TBG4 499 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 NEK9Q8TD19 979 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 SNX29Q8TEQ0 813 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 RAD54LQ92698 747 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 HAS1Q92839 578 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ERCC4Q92889 916 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 IQCDQ96DY2 449 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TRERF1Q96PN7 1200 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 MMTAG2Q9BU76 263 aaKnown RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 POLR3CQ9BUI4 534 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 WDR11Q9BZH6 1224 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 XPO4Q9C0E2 1151 aaKnown RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 THAP9Q9H5L6 903 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 SLC38A10Q9HBR0 1119 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TIMMDC1Q9NPL8 285 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 RAB6BQ9NRW1 208 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 KCND1Q9NSA2 647 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 SPTLC3Q9NUV7 552 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 EXOC1Q9NV70 894 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 IFNKQ9P0W0 207 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 PPP1R9AQ9ULJ8 1098 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 CTDP1Q9Y5B0 961 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.91□□□□□ -1.3
SYNE1-239ENST00000545694 PTPRFP10586 1907 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 RLFQ13129 1914 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 MYH11P35749 1972 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 A0A1B0GTH6 734 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 KIF2AO00139 706 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 MAFGO15525 162 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 EDIL3O43854 480 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 KLRC4O43908 158 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 PPP1R12BO60237 982 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 SFPQP23246 707 aaKnown RBP eCLIP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 RPA1P27694 616 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 CCT6AP40227 531 aaKnown RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 ASIC1P78348 528 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 GRB10Q13322 594 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 USH1GQ495M9 461 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 CEP55Q53EZ4 464 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 ANGEL2Q5VTE6 544 aaKnown RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 CDKAL1Q5VV42 579 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 CCDC186Q7Z3E2 898 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 LDHDQ86WU2 507 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 VSTM4Q8IW00 320 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 LRRC8AQ8IWT6 810 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 GRAMD1CQ8IYS0 662 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 SPICE1Q8N0Z3 855 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 ADSSL1Q8N142 457 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 SPC24Q8NBT2 197 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 NLGN2Q8NFZ4 835 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 KIAA1524Q8TCG1 905 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 KLRG1Q96E93 195 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 NUP88Q99567 741 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 RIT2Q99578 217 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 HSD3B7Q9H2F3 369 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 TUFT1Q9NNX1 390 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 FANCLQ9NW38 375 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 HOXC10Q9NYD6 342 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 TMOD4Q9NZQ9 345 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 KCND2Q9NZV8 630 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 LIMA1Q9UHB6 759 aaKnown RBP6.9□□□□□ -1.3
SYNE1-239ENST00000545694 CCPG1Q9ULG6 757 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 FRMPD4Q14CM0 1322 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 ITIH6Q6UXX5 1313 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF541Q9H0D2 1346 aa6.9□□□□□ -1.3
SYNE1-239ENST00000545694 WDR81Q562E7 1941 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 MEIS1O00470 390 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 OPLAHO14841 1288 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 OFD1O75665 1012 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 STAM2O75886 525 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 CFBP00751 764 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 F11P03951 625 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 TPM1P09493 284 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 PTPRAP18433 802 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 VCAM1P19320 739 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 MX2P20592 715 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms