RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 CCDC68Q9H2F9 335 aa13.5□□□□□ -0.25
COL4A6-209ENST00000545689 TARSL2A2RTX5 802 aaKnown RBP13.5□□□□□ -0.25
COL4A6-209ENST00000545689 NXNQ6DKJ4 435 aa13.5□□□□□ -0.25
COL4A6-209ENST00000545689 CENPUQ71F23 418 aa13.5□□□□□ -0.25
COL4A6-209ENST00000545689 GBP7Q8N8V2 638 aaPredicted RBP13.5□□□□□ -0.25
COL4A6-209ENST00000545689 RBM41Q96IZ5 413 aaKnown RBP13.5□□□□□ -0.25
COL4A6-209ENST00000545689 DNAJC12Q9UKB3 198 aa13.5□□□□□ -0.25
COL4A6-209ENST00000545689 SUGT1Q9Y2Z0 365 aa13.5□□□□□ -0.25
COL4A6-209ENST00000545689 NAALADL2Q58DX5 795 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 MUM1L1Q5H9M0 696 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 RCSD1Q6JBY9 416 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 OXER1Q8TDS5 423 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 RPS6KC1Q96S38 1066 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 HAUS8Q9BT25 410 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ADGRG1Q9Y653 693 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 TTI1O43156 1089 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 PALMO75781 387 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 MT-ND3P03897 115 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ANXA13P27216 316 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 CTTNQ14247 550 aaKnown RBP13.49□□□□□ -0.25
COL4A6-209ENST00000545689 BZW1Q7L1Q6 419 aaKnown RBP13.49□□□□□ -0.25
COL4A6-209ENST00000545689 FAM167AQ96KS9 214 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ASNSP08243 561 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 PSMD6Q15008 389 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 SHC4Q6S5L8 630 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ATG9AQ7Z3C6 839 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ADAMTS1Q9UHI8 967 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 NOVA2Q9UNW9 492 aaKnown RBP13.49□□□□□ -0.25
COL4A6-209ENST00000545689 IQANK1A0A1B0GTG1 560 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 LRRC53A6NM62 1247 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 PRR29P0C7W0 189 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 PPARDQ03181 441 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ARID5BQ14865 1188 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 TTC19Q6DKK2 380 aaPredicted RBP13.49□□□□□ -0.25
COL4A6-209ENST00000545689 PCGF5Q86SE9 256 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 KCTD6Q8NC69 237 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ITIH6Q6UXX5 1313 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 SNX1Q13596 522 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 METTL23Q86XA0 190 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 ELOA2Q8IYF1 753 aaPredicted RBP13.49□□□□□ -0.25
COL4A6-209ENST00000545689 AKT3Q9Y243 479 aa13.49□□□□□ -0.25
COL4A6-209ENST00000545689 INO80B-WBP1J3KQ70 363 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 TJP3O95049 919 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 ECE1P42892 770 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 IFNAR2P48551 515 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 USP11P51784 963 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 TERF2Q15554 542 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 DARS2Q6PI48 645 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 RAB44Q7Z6P3 723 aaPredicted RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 TRIM56Q9BRZ2 755 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 INO80BQ9C086 356 aaPredicted RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 QTRT2Q9H974 415 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 LIMA1Q9UHB6 759 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 CYP2D6P10635 497 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 GPC5P78333 572 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 KNOP1Q1ED39 458 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 CCDC144BQ3MJ40 725 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 TTC13Q8NBP0 860 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 TACO1Q9BSH4 297 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SRP68Q9UHB9 627 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 MRFAP1Q9Y605 127 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 EXOC1LA0A1B0GW35 172 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 PRPSAP2O60256 369 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 FGGP02679 453 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 CRKP46108 304 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 ZNF772Q68DY9 489 aaPredicted RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 ATP6V0A4Q9HBG4 840 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 THEGQ9P2T0 379 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 FBXO2Q9UK22 296 aaPredicted RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SORBS3O60504 671 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 LPXNO60711 386 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 GGPS1O95749 300 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 MYBL1P10243 752 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SFNP31947 248 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SFR1Q86XK3 245 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 FAM193BQ96PV7 902 aaPredicted RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SLC38A10Q9HBR0 1119 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 NFU1Q9UMS0 254 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 AXIN2Q9Y2T1 843 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 IQGAP1P46940 1657 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 KRT76Q01546 638 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SRRM1Q8IYB3 904 aaKnown RBP13.48□□□□□ -0.25
COL4A6-209ENST00000545689 XXYLT1Q8NBI6 393 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 MSTO1Q9BUK6 570 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 CD209Q9NNX6 404 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 CAPN11Q9UMQ6 739 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 PLAAQ9Y263 795 aa13.48□□□□□ -0.25
COL4A6-209ENST00000545689 SF3A3Q12874 501 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL4A6-209ENST00000545689 TTC25Q96NG3 672 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 PFASO15067 1338 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 TRIM49BA6NDI0 452 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 KIF28PB7ZC32 967 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 RNF207Q6ZRF8 634 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 KRT27Q7Z3Y8 459 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 PODNQ7Z5L7 613 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 MICAL1Q8TDZ2 1067 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL4A6-209ENST00000545689 ZNF609O15014 1411 aa13.47□□□□□ -0.25
COL4A6-209ENST00000545689 TFAMQ00059 246 aaKnown RBP13.47□□□□□ -0.25
COL4A6-209ENST00000545689 PDIA5Q14554 519 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms