RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 SPARCL1Q14515 664 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 EFTUD2Q15029 972 aaKnown RBP eCLIP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 RNF219Q5W0B1 726 aaPredicted RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 CMTR1Q8N1G2 835 aaKnown RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 LRRC47Q8N1G4 583 aaKnown RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 GPKOWQ92917 476 aaPredicted RBP eCLIP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 SAAL1Q96ER3 474 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 KIAA1024Q9UPX6 916 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 CAB39Q9Y376 341 aaPredicted RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 PHLPP2Q6ZVD8 1323 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 TCOF1Q13428 1488 aaKnown RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 LAD1O00515 517 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 WDR47O94967 919 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 ZNF18P17022 549 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 RBL2Q08999 1139 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 MXD4Q14582 209 aaPredicted RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 CERKLQ49MI3 558 aaPredicted RBP11.15□□□□□ -0.62
PCDH9-204ENST00000544246 ARMCX2Q7L311 632 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 ZFP69BQ9UJL9 534 aa11.15□□□□□ -0.62
PCDH9-204ENST00000544246 RNF103-CHMP3A0A140T963 221 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 GSNP06396 782 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 KRT7P08729 469 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 AP2B1P63010 937 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 ARHGEF6Q15052 776 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 HIF1AQ16665 826 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 GJC2Q5T442 439 aaPredicted RBP11.15□□□□□ -0.63
PCDH9-204ENST00000544246 TTC30AQ86WT1 665 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 C7orf31Q8N865 590 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 HSPH1Q92598 858 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 TMEM206Q9H813 350 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 ATG3Q9NT62 314 aa11.15□□□□□ -0.63
PCDH9-204ENST00000544246 NFKBIL1Q9UBC1 381 aaPredicted RBP11.15□□□□□ -0.63
PCDH9-204ENST00000544246 KRT37O76014 449 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 FOSP01100 380 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 DMTNQ08495 405 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 MORF4L2Q15014 288 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ARHGAP18Q8N392 663 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF500O60304 480 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 MYO1DO94832 1006 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 RWDD2BP57060 319 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 GCKRQ14397 625 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 SEPT12Q8IYM1 358 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 PPHLN1Q8NEY8 458 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 TTC17Q96AE7 1141 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 IFT43Q96FT9 208 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 DHTKD1Q96HY7 919 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 PITPNM3Q9BZ71 974 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 STMN3Q9NZ72 180 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 SEC24BO95487 1268 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 TCF3P15923 654 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 KCTD2Q14681 263 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 KRT72Q14CN4 511 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 KIAA1755Q5JYT7 1200 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 RRM2BQ7LG56 351 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 PDIK1LQ8N165 341 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF280CQ8ND82 737 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ULK4Q96C45 1275 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 HEXIM2Q96MH2 286 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF577Q9BSK1 485 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 POLE3Q9NRF9 147 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 TCP10L2B9ZVM9 353 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 PI4K2BG5E9Z4 385 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 HMGB3O15347 200 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 DDIT3P35638 169 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 RANBP1P43487 201 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 COPS2P61201 443 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 HDLBPQ00341 1268 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 RWDD4Q6NW29 188 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 UBE2TQ9NPD8 197 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 DNMT1P26358 1616 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 PZPP20742 1482 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 CCDC151A5D8V7 595 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 CTIFO43310 598 aaKnown RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ORC4O43929 436 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 FTCDO95954 541 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 VCAM1P19320 739 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 UBE3AQ05086 875 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 RBBP7Q16576 425 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 DPP9Q86TI2 863 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ENAHQ8N8S7 591 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-204ENST00000544246 ICA1LQ8NDH6 482 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 SLC7A3Q8WY07 619 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 YIPF3Q9GZM5 350 aa11.14□□□□□ -0.63
PCDH9-204ENST00000544246 KLRF2D3W0D1 207 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 INO80B-WBP1J3KQ70 363 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 M0R2C6 588 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 NBNO60934 754 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 CSPG5O95196 566 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 DDX5P17844 614 aaKnown RBP11.13□□□□□ -0.63
PCDH9-204ENST00000544246 ELF1P32519 619 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 CYP4A11Q02928 519 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 ICA1Q05084 483 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 ME3Q16798 604 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 ANO5Q75V66 913 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 DCPSQ96C86 337 aaKnown RBP11.13□□□□□ -0.63
PCDH9-204ENST00000544246 FMO2Q99518 471 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 INO80BQ9C086 356 aaPredicted RBP11.13□□□□□ -0.63
PCDH9-204ENST00000544246 ATP6V0A4Q9HBG4 840 aa11.13□□□□□ -0.63
PCDH9-204ENST00000544246 DNAJC17Q9NVM6 304 aaKnown RBP11.13□□□□□ -0.63
PCDH9-204ENST00000544246 LRRN2O75325 713 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms