RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SPATA31C1	P0DKV0	1188 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	CMA1	P23946	247 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	SOX10	P56693	466 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	IGBP1	P78318	339 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	PRKCE	Q02156	737 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	KARS	Q15046	597 aa	Known RBP	11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLCB4	Q15147	1175 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	NBPF20	Q3BBV1	942 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	XKR9	Q5GH70	373 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	XKR3	Q5GH77	459 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	RRAGB	Q5VZM2	374 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	POTEG	Q6S5H5	508 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	SHC4	Q6S5L8	630 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	C4orf19	Q8IY42	314 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	PDILT	Q8N807	584 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	FSIP1	Q8NA03	581 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	ANKLE1	Q8NAG6	615 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	ATP8B4	Q8TF62	1192 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	PAWR	Q96IZ0	340 aa	Known RBP	11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	MMTAG2	Q9BU76	263 aa	Known RBP	11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCSER1	Q9C0I3	900 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	NT5C3A	Q9H0P0	336 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	RNPEP	Q9H4A4	650 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	C11orf49	Q9H6J7	331 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	DNM3	Q9UQ16	869 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	MYH7B	A7E2Y1	1941 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1B0GVL5	298 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1W2PQ27	194 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1W2PQ64	194 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1W2PQD8	194 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	SLC26A4	O43511	780 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	ZNF862	O60290	1169 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	HBP1	O60381	514 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	SMIM10L2A	P0DMW4	78 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	SMIM10L2B	P0DMW5	78 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	ATP4A	P20648	1035 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	YWHAB	P31946	246 aa	Known RBP	11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	ATN1	P54259	1190 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	PPFIA1	Q13136	1202 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	GRB10	Q13322	594 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	ITGA7	Q13683	1181 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	ECM1	Q16610	540 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	MTERF2	Q49AM1	385 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	RESP18	Q5W5W9	173 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCDC73	Q6ZRK6	1079 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	CLEC17A	Q6ZS10	378 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	NECAB2	Q7Z6G3	386 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	PIGO	Q8TEQ8	1089 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	DIS3L	Q8TF46	1054 aa	Known RBP	11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	BBX	Q8WY36	941 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	CEP170P1	Q96L14	293 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	PNMA5	Q96PV4	448 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	WRAP73	Q9P2S5	460 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	KCNH3	Q9ULD8	1083 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	MCM3AP	O60318	1980 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545	IGSF9B	Q9UPX0	1349 aa		11.35	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A0U1RQG5	324 aa	Predicted RBP	11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	C17orf102	A2RUQ5	167 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	ARHGEF35	A5YM69	484 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	TMEM150B	A6NC51	233 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545		E9PMD0	336 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	HAS3	O00219	553 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	ZBTB39	O15060	712 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	GADD45B	O75293	160 aa	Predicted RBP	11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	LYPLA2	O95372	231 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	GNAT1	P11488	350 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	XRCC6	P12956	609 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	INSRR	P14616	1297 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLCG1	P19174	1290 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	MUT	P22033	750 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	STAT6	P42226	847 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	DHX8	Q14562	1220 aa	Known RBP	11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	GRIK4	Q16099	956 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	ZNF484	Q5JVG2	852 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLA2G4F	Q68DD2	849 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	TMEM87A	Q8NBN3	555 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	MRPS27	Q92552	414 aa	Known RBP	11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	DHX58	Q96C10	678 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	SH2D3A	Q9BRG2	576 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	ANKEF1	Q9NU02	776 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	SETD4	Q9NVD3	440 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	HDAC6	Q9UBN7	1215 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	NOD1	Q9Y239	953 aa		11.34	□□□□□ -0.59
CPSF7-221	ENST00000543545	RRN3P2	A6NIE6	340 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	ARVCF	O00192	962 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	POLR2D	O15514	142 aa	Known RBP	11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	PFKFB1	P16118	471 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	SYK	P43405	635 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	MNX1	P50219	401 aa	Predicted RBP	11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	NPEPPS	P55786	919 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	UBE2H	P62256	183 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	TBC1D8B	Q0IIM8	1120 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	TMEM119	Q4V9L6	283 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	HYI	Q5T013	277 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	NFRKB	Q6P4R8	1299 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	ANO5	Q75V66	913 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	KCTD17	Q8N5Z5	321 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	IQUB	Q8NA54	791 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	TRAPPC12	Q8WVT3	735 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	PYM1	Q9BRP8	204 aa	Known RBP	11.33	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms