RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 RTEL1Q9NZ71 1219 aa13.11□□□□□ -0.31
SRGAP1-205ENST00000542841 DDX41Q9UJV9 622 aaKnown RBP13.11□□□□□ -0.31
SRGAP1-205ENST00000542841 PCDHA4Q9UN74 947 aa13.11□□□□□ -0.31
SRGAP1-205ENST00000542841 KCNJ14Q9UNX9 436 aa13.11□□□□□ -0.31
SRGAP1-205ENST00000542841 C19orf67A6NJJ6 358 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 RSPH10B2B2RC85 870 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 BTBD18B2RXH4 712 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 FIBPO43427 364 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 NCK2O43639 380 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 TRAK2O60296 914 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 RSPH10BP0C881 870 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 ZNF286BP0CG31 522 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 THPOP40225 353 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 TRAPPC10P48553 1259 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 NASPP49321 788 aaPredicted RBP13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 ZNF200P98182 395 aaPredicted RBP13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 MKRN4PQ13434 485 aaPredicted RBP13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 HFE2Q6ZVN8 426 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 MCF2L2Q86YR7 1114 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 BLIDQ8IZY5 108 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 WNT8BQ93098 351 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 TOP1MTQ969P6 601 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 TAAR1Q96RJ0 339 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 RMDN3Q96TC7 470 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 UBA5Q9GZZ9 404 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 CLDND1Q9NY35 253 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 RCOR1Q9UKL0 485 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 NOL7Q9UMY1 257 aaKnown RBP13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 MRVI1Q9Y6F6 885 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 ABCB11O95342 1321 aa13.1□□□□□ -0.31
SRGAP1-205ENST00000542841 EIF3JO75822 258 aaKnown RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 BMP15O95972 392 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 NAPAP54920 295 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 COL19A1Q14993 1142 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 NPY5RQ15761 445 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 FOXD4L6Q3SYB3 417 aaPredicted RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 PLEKHG4Q58EX7 1191 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 ARHGEF16Q5VV41 709 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 MCTP2Q6DN12 878 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 FOXD4L3Q6VB84 417 aaPredicted RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 HEATR3Q7Z4Q2 680 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 FBXO11Q86XK2 927 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 TMEM192Q8IY95 271 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 KCNG4Q8TDN1 519 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 SYTL5Q8TDW5 730 aaPredicted RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 LEO1Q8WVC0 666 aaPredicted RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 TBC1D5Q92609 795 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 TNFRSF25Q93038 417 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 USP28Q96RU2 1077 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 POP1Q99575 1024 aaKnown RBP13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 CEP131Q9UPN4 1083 aa13.09□□□□□ -0.31
SRGAP1-205ENST00000542841 hCG_1642624A0A1W2PR95 340 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 PPFIA4O75335 1185 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 UPP2O95045 317 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 EIF2AK2P19525 551 aaKnown RBP13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 IRS1P35568 1242 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 CDC37Q16543 378 aaPredicted RBP13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 FAM173BQ6P4H8 233 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 SERINC5Q86VE9 423 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 HOMER1Q86YM7 354 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 SEPT8Q92599 483 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 GPKOWQ92917 476 aaPredicted RBP eCLIP13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 VAT1LQ9HCJ6 419 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 COL20A1Q9P218 1284 aa13.08□□□□□ -0.32
SRGAP1-205ENST00000542841 RBAK-RBAKDNI3L0D1 243 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 M0R2N6 131 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 PPP6R2O75170 966 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 ORC2Q13416 577 aaPredicted RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 HIC1Q14526 733 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 SMAD2Q15796 467 aaKnown RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 QRICH1Q2TAL8 776 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 HERC4Q5GLZ8 1057 aaPredicted RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 KRT25Q7Z3Z0 450 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 RPAINQ86UA6 219 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 LINC00301Q8NCQ3 95 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 SYAP1Q96A49 352 aaPredicted RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 AMNQ9BXJ7 453 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 IFIH1Q9BYX4 1025 aaKnown RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 CPVLQ9H3G5 476 aa13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 TFIP11Q9UBB9 837 aaKnown RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 MRPL11Q9Y3B7 192 aaKnown RBP13.07□□□□□ -0.32
SRGAP1-205ENST00000542841 MICAL3Q7RTP6 2002 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 C17orf102A2RUQ5 167 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 GOLGA6L4A6NEF3 574 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 SMCO2A6NFE2 343 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 NR3C2P08235 984 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 HOXD8P13378 290 aaPredicted RBP13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 LTBRP36941 435 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 NR5A1Q13285 461 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 SLC39A14Q15043 492 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 STK38Q15208 465 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 HSDL1Q3SXM5 330 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 TYW1BQ6NUM6 668 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 KCNV1Q6PIU1 500 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 OXER1Q8TDS5 423 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 PIBF1Q8WXW3 757 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 ATP6V0A1Q93050 837 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 CHAMP1Q96JM3 812 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 SPATA33Q96N06 139 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 GDPD2Q9HCC8 539 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms