RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 MCM3P25205 808 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 ZNF76P36508 570 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 SPP2Q13103 211 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 AFAP1L1Q8TED9 768 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 AENQ8WTP8 325 aaKnown RBP18.91■□□□□ 0.62
SPIDR-227ENST00000541342 SLC39A2Q9NP94 309 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 JADE2Q9NQC1 790 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 ZNHIT6Q9NWK9 470 aaKnown RBP18.91■□□□□ 0.62
SPIDR-227ENST00000541342 SNX12Q9UMY4 172 aa18.91■□□□□ 0.62
SPIDR-227ENST00000541342 HNRNPH3P31942 346 aaKnown RBP18.9■□□□□ 0.62
SPIDR-227ENST00000541342 SLC30A10Q6XR72 485 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 CATSPER3Q86XQ3 398 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 CLEC4DQ8WXI8 215 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 SECISBP2LQ93073 1101 aaKnown RBP18.9■□□□□ 0.62
SPIDR-227ENST00000541342 CCDC47Q96A33 483 aaKnown RBP18.9■□□□□ 0.62
SPIDR-227ENST00000541342 DNAJC19Q96DA6 116 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 PLAGL2Q9UPG8 496 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 SIK3Q9Y2K2 1263 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 RLFQ13129 1914 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 PVALEFA0A1B0GWK0 134 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 BICDL2A1A5D9 508 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 NFIBO00712 420 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 PTPRAP18433 802 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 MTIF2P46199 727 aaKnown RBP18.9■□□□□ 0.62
SPIDR-227ENST00000541342 MLXIPQ9HAP2 919 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 SLC38A10Q9HBR0 1119 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 POTEFA5A3E0 1075 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 POTEIP0CG38 1075 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 SPATA31C1P0DKV0 1188 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 HSD17B4P51659 736 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 EHHADHQ08426 723 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 COBLL1Q53SF7 1204 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 POTEGQ6S5H5 508 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 POTEEQ6S8J3 1075 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 CAGE1Q8TC20 777 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 RPAP3Q9H6T3 665 aaPredicted RBP18.9■□□□□ 0.62
SPIDR-227ENST00000541342 COL20A1Q9P218 1284 aa18.9■□□□□ 0.62
SPIDR-227ENST00000541342 FLOT1O75955 427 aa18.89■□□□□ 0.62
SPIDR-227ENST00000541342 ZNF572Q7Z3I7 529 aaPredicted RBP18.89■□□□□ 0.62
SPIDR-227ENST00000541342 RAVER2Q9HCJ3 691 aaKnown RBP18.89■□□□□ 0.62
SPIDR-227ENST00000541342 KIF5AQ12840 1032 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 CPXCR1Q8N123 301 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 DMGDHQ9UI17 866 aaKnown RBP18.89■□□□□ 0.61
SPIDR-227ENST00000541342 PPP1R9AQ9ULJ8 1098 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 PLA2G4BP0C869 781 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 BACE1P56817 501 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 MAPK8IP2Q13387 824 aaPredicted RBP18.89■□□□□ 0.61
SPIDR-227ENST00000541342 CENPPQ6IPU0 288 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 WNK4Q96J92 1243 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 PCMTD1Q96MG8 357 aaPredicted RBP18.89■□□□□ 0.61
SPIDR-227ENST00000541342 SALL4Q9UJQ4 1053 aa18.89■□□□□ 0.61
SPIDR-227ENST00000541342 COL11A1P12107 1806 aaPredicted RBP18.88■□□□□ 0.61
SPIDR-227ENST00000541342 SLC26A4O43511 780 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 DDNO94850 711 aaPredicted RBP18.88■□□□□ 0.61
SPIDR-227ENST00000541342 PSMC6P62333 389 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 GPIHBP1Q8IV16 184 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 GLIS3Q8NEA6 775 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 EML1O00423 815 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 IPO7O95373 1038 aaKnown RBP18.88■□□□□ 0.61
SPIDR-227ENST00000541342 LCA5LO95447 670 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 MRPS25P82663 173 aaKnown RBP18.88■□□□□ 0.61
SPIDR-227ENST00000541342 DLK2Q6UY11 383 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 FAM114A1Q8IWE2 563 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 KLRG1Q96E93 195 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 CCDC42Q96M95 316 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 LRRC1Q9BTT6 524 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 SMARCAL1Q9NZC9 954 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 JRKLQ9Y4A0 524 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 PCDHA13Q9Y5I0 950 aa18.88■□□□□ 0.61
SPIDR-227ENST00000541342 SHOX2O60902 331 aaPredicted RBP18.87■□□□□ 0.61
SPIDR-227ENST00000541342 RPA1P27694 616 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 HAUS3Q68CZ6 603 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 MMGT1Q8N4V1 131 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 ZNF280CQ8ND82 737 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 IFIH1Q9BYX4 1025 aaKnown RBP18.87■□□□□ 0.61
SPIDR-227ENST00000541342 LRRC27Q9C0I9 530 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 RSPH14Q9UHP6 348 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 NPHP3-ACAD11A0A0J9YXS1 232 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 MEIS1O00470 390 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 MOCS3O95396 460 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 SSBP05455 408 aaKnown RBP eCLIP18.87■□□□□ 0.61
SPIDR-227ENST00000541342 SLC12A3P55017 1021 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 PICK1Q9NRD5 415 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 FAM207AQ9NSI2 230 aaPredicted RBP18.87■□□□□ 0.61
SPIDR-227ENST00000541342 EHD2Q9NZN4 543 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 ANKRD65E5RJM6 399 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 ALAS1P13196 640 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 KIF11P52732 1056 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 TRIM58Q8NG06 486 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 DRC1Q96MC2 740 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 TSGA10Q9BZW7 698 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 HOMER2Q9NSB8 354 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 ZHX2Q9Y6X8 837 aa18.87■□□□□ 0.61
SPIDR-227ENST00000541342 PSMD10O75832 226 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 VWA3BQ502W6 1294 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 CEP55Q53EZ4 464 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 ARSHQ5FYA8 562 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 NFRKBQ6P4R8 1299 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 OTOP1Q7RTM1 612 aa18.86■□□□□ 0.61
SPIDR-227ENST00000541342 SLC5A5Q92911 643 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms