RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DCCP43146 1447 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 PSMC5P62195 406 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 RHPN2Q8IUC4 686 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 ZNF579Q8NAF0 562 aaKnown RBP15.29■□□□□ 0.04
USP3-204ENST00000540797 MRPL47Q9HD33 250 aaKnown RBP15.29■□□□□ 0.04
USP3-204ENST00000540797 PRPSAP1Q14558 356 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 KRT71Q3SY84 523 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 ZNF568Q3ZCX4 644 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 ZNF667Q5HYK9 610 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 DPH5Q9H2P9 285 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 PFDN6O15212 129 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 SLC16A4O15374 487 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 XPAP23025 273 aaPredicted RBP15.28■□□□□ 0.04
USP3-204ENST00000540797 USP11P51784 963 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 NAA35Q5VZE5 725 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 TEX13BQ9BXU2 312 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.28■□□□□ 0.04
USP3-204ENST00000540797 ATF2P15336 505 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 GUCY2FP51841 1108 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 PTPN21Q16825 1174 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 ERCC6LQ2NKX8 1250 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 RNF139Q8WU17 664 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 KIAA1586Q9HCI6 787 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 CEMIPQ8WUJ3 1361 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 KDM6AO15550 1401 aaPredicted RBP15.28■□□□□ 0.04
USP3-204ENST00000540797 I3L4J1 428 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 NDUFB10O96000 172 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 GCNAQ96QF7 691 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 NYAP2Q9P242 653 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 TDP2O95551 362 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 GYS1P13807 737 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 CPSF3Q9UKF6 684 aaKnown RBP15.28■□□□□ 0.04
USP3-204ENST00000540797 KCNH4Q9UQ05 1017 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 GDAQ9Y2T3 454 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 PREX1Q8TCU6 1659 aa15.28■□□□□ 0.04
USP3-204ENST00000540797 GOLGA8FQ08AF8 430 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 ZNF543Q08ER8 600 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 GOLGA8DPQ0D2H9 430 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 SAMD7Q7Z3H4 446 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 C2orf40Q9H1Z8 148 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 ARL4AP40617 200 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 KCNV1Q6PIU1 500 aa15.27■□□□□ 0.04
USP3-204ENST00000540797 PARK7Q99497 189 aaKnown RBP15.27■□□□□ 0.04
USP3-204ENST00000540797 CDC25BP30305 580 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 RYBPQ8N488 228 aaPredicted RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 LXNQ9BS40 222 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 SPZ1Q9BXG8 430 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 CCDC68Q9H2F9 335 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 KIF9Q9HAQ2 790 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 POTEFA5A3E0 1075 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 POTEIP0CG38 1075 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 ETF1P62495 437 aaKnown RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 POTEGQ6S5H5 508 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 POTEEQ6S8J3 1075 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 THEM5Q8N1Q8 247 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 SRBD1Q8N5C6 995 aaKnown RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 XXYLT1Q8NBI6 393 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 BBOF1Q8ND07 529 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 AGBL3Q8NEM8 1001 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 GPBP1L1Q9HC44 474 aaPredicted RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 TYW1Q9NV66 732 aaKnown RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 SLC9A2Q9UBY0 812 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 TXNP10599 105 aaKnown RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 ZBED6P86452 979 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 PNMA8AQ86V59 439 aaPredicted RBP15.27■□□□□ 0.03
USP3-204ENST00000540797 TSC1Q92574 1164 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 DEFB129Q9H1M3 183 aa15.27■□□□□ 0.03
USP3-204ENST00000540797 CCNYQ8ND76 341 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 POLD4Q9HCU8 107 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 PLCB4Q15147 1175 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 TCP11X2Q5H9J9 407 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 CAPN12Q6ZSI9 719 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 GDAP1L1Q96MZ0 367 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 TMEM39BQ9GZU3 492 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 POLR3FQ9H1D9 316 aaPredicted RBP15.26■□□□□ 0.03
USP3-204ENST00000540797 PCDHA10Q9Y5I2 948 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 PASKQ96RG2 1323 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 LMNB2Q03252 620 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 C16orf86Q6ZW13 317 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 CLEC10AQ8IUN9 316 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 GCOM2Q9BZD3 368 aaPredicted RBP15.26■□□□□ 0.03
USP3-204ENST00000540797 SCAF8Q9UPN6 1271 aaKnown RBP15.26■□□□□ 0.03
USP3-204ENST00000540797 MAD1L1Q9Y6D9 718 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 ZBBXA8MT70 800 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 CTNNA1P35221 906 aaKnown RBP15.26■□□□□ 0.03
USP3-204ENST00000540797 PPARDQ03181 441 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 PHLDB2Q86SQ0 1253 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 ZFYVE28Q9HCC9 887 aa15.26■□□□□ 0.03
USP3-204ENST00000540797 PXDNLA1KZ92 1463 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 SGK1O00141 431 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 KRT1P04264 644 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 CEP55Q53EZ4 464 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 STOX1Q6ZVD7 989 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 ZNF668Q96K58 619 aaPredicted RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 FAM213AQ9BRX8 229 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 PVALEFA0A1B0GWK0 134 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 NR3C1P04150 777 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 SERPING1P05155 500 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 HUNKP57058 714 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 BAATQ14032 418 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms