RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ADHFE1Q8IWW8 467 aa13.71□□□□□ -0.21
CBX3P4-202ENST00000540428 CELF4Q9BZC1 486 aaKnown RBP13.71□□□□□ -0.21
CBX3P4-202ENST00000540428 FAM49AQ9H0Q0 323 aaPredicted RBP13.71□□□□□ -0.21
CBX3P4-202ENST00000540428 AGO4Q9HCK5 861 aaKnown RBP13.71□□□□□ -0.21
CBX3P4-202ENST00000540428 TTC3P53804 2025 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 IGKV6D-21A0A0A0MT36 114 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 MEIS1O00470 390 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 ARP10275 920 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 SREBF1P36956 1147 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 FUT2Q10981 343 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 HYAL1Q12794 435 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 PAK2Q13177 524 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 SMAD2Q15796 467 aaKnown RBP13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 RTN1Q16799 776 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 TYW1BQ6NUM6 668 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 NIPA1Q7RTP0 329 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 RTN4RL1Q86UN2 441 aaPredicted RBP13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 CYP2W1Q8TAV3 490 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 PPP2R3CQ969Q6 453 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 NEK1Q96PY6 1258 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 ANO3Q9BYT9 981 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 UPF3BQ9BZI7 483 aaKnown RBP13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 PADI3Q9ULW8 664 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 PLAGL2Q9UPG8 496 aa13.7□□□□□ -0.22
CBX3P4-202ENST00000540428 KAT6AQ92794 2004 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 ZBTB43O43298 467 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 HBP1O60381 514 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 SCG2P13521 617 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 CLK2P49760 499 aaKnown RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 ADCY7P51828 1080 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 RCAN1P53805 252 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 EXOSC10Q01780 885 aaKnown RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 ITGB3BPQ13352 177 aaPredicted RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 CAMK1Q14012 370 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 TSGA10IPQ3SY00 556 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 MTHFD1LQ6UB35 978 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 DHX32Q7L7V1 743 aaKnown RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 ZBTB10Q96DT7 871 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 POP1Q99575 1024 aaKnown RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 RNF216Q9NWF9 866 aaPredicted RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 BARHL2Q9NY43 387 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 MRPL42Q9Y6G3 142 aaKnown RBP13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 NLRC5Q86WI3 1866 aa13.69□□□□□ -0.22
CBX3P4-202ENST00000540428 SMCO2A6NFE2 343 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 STXBP3O00186 592 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 MBTPS2O43462 519 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 SARSP49591 514 aaKnown RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 IRX6P78412 446 aaPredicted RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 KRT76Q01546 638 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 DLX2Q07687 328 aaPredicted RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 SMAD4Q13485 552 aaKnown RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 CSPP1Q1MSJ5 1256 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 BMP2KLQ5H9B9 411 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 ODR4Q5SWX8 454 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 FAM160B1Q5W0V3 765 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 ABHD15Q6UXT9 468 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 ATP8B4Q8TF62 1192 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 TRAPPC12Q8WVT3 735 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 PGBD1Q96JS3 809 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 ALG13Q9NP73 1137 aaKnown RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 V9GY48 417 aaPredicted RBP13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 COL1A2P08123 1366 aa13.68□□□□□ -0.22
CBX3P4-202ENST00000540428 TBX10O75333 385 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 CCNE2O96020 404 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 ITGB1P05556 798 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 KLRC1P26715 233 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 ZNF76P36508 570 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 TMEM62Q0P6H9 643 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 ADAM15Q13444 863 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 KRT32Q14532 448 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 MCTP2Q6DN12 878 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 SPPL3Q8TCT6 385 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 KCNH6Q9H252 994 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 TMX1Q9H3N1 280 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 ERVK-5Q9HDB9 667 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 C1orf112Q9NSG2 853 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 CD207Q9UJ71 328 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 BRPF3Q9ULD4 1205 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 LRFN2Q9ULH4 789 aa13.67□□□□□ -0.22
CBX3P4-202ENST00000540428 GOLGA8AA7E2F4 631 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 GOLGA8BA8MQT2 603 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 BACH1O14867 736 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 EYA4O95677 639 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 CYP3A4P08684 503 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 HMGB1P09429 215 aaKnown RBP13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 GTF2F1P35269 517 aaKnown RBP eCLIP13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 IRS1P35568 1242 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 UBE3AQ05086 875 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 NFX1Q12986 1120 aaKnown RBP13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 ZNF484Q5JVG2 852 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 MIS18BP1Q6P0N0 1132 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 KIAA0319LQ8IZA0 1049 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 EFHBQ8N7U6 833 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 KLHL23Q8NBE8 558 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 CRYGNQ8WXF5 182 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 MSLNLQ96KJ4 702 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 IGFLR1Q9H665 355 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 ZNF302Q9NR11 478 aa13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 FAM217BQ9NTX9 383 aaPredicted RBP13.66□□□□□ -0.22
CBX3P4-202ENST00000540428 TMEM260Q9NX78 707 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms