RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KAT14Q9H8E8 782 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 SETD4Q9NVD3 440 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 ACACBO00763 2458 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 KLF18A0A0U1RQI7 1052 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 LGALS2P05162 132 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 UBA1P22314 1058 aaKnown RBP14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 LIFRP42702 1097 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 HSD17B4P51659 736 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 GHRHRQ02643 423 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 LPIN1Q14693 890 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 CDC37Q16543 378 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 KCNV1Q6PIU1 500 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 CATIPQ7Z7H3 387 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 RTN4RL1Q86UN2 441 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 MCF2L2Q86YR7 1114 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 ADSSL1Q8N142 457 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 ENAHQ8N8S7 591 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 POF1BQ8WVV4 589 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 PDCD2LQ9BRP1 358 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 S1PR5Q9H228 398 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 LIMCH1Q9UPQ0 1083 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 SLC12A7Q9Y666 1083 aa14.32□□□□□ -0.12
CLSTN3-208ENST00000538933 MED19A0JLT2 244 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 HSP90AA1P07900 732 aaKnown RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 TGFB3P10600 412 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 MGAT3Q09327 533 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 APOBRQ0VD83 1088 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 KCNC3Q14003 757 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 COL9A3Q14050 684 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 TOB2Q14106 344 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 GPATCH4Q5T3I0 446 aaKnown RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 DGKHQ86XP1 1220 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 ADGRF4Q8IZF3 695 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 IL31RAQ8NI17 732 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 IGDCC4Q8TDY8 1250 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 LINC01599Q8WXQ3 324 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 NKD2Q969F2 451 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 ZSCAN31Q96LW9 406 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 LARP6Q9BRS8 491 aaKnown RBP14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 TLE6Q9H808 572 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 LY9Q9HBG7 655 aa14.31□□□□□ -0.12
CLSTN3-208ENST00000538933 FNDC1Q4ZHG4 1894 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 GOLGA8BA8MQT2 603 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 K7ELQ4 463 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 PER2O15055 1255 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 GHRP10912 638 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 SEC23AQ15436 765 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 QRICH1Q2TAL8 776 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 TMEM184AQ6ZMB5 413 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 CMTR2Q8IYT2 770 aaKnown RBP14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 SNX21Q969T3 373 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 SLKQ9H2G2 1235 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 SH2B1Q9NRF2 756 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 TELO2Q9Y4R8 837 aa14.3□□□□□ -0.12
CLSTN3-208ENST00000538933 ZBTB43O43298 467 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 KRT37O76014 449 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 BRD1O95696 1058 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 CALM1P0DP23 149 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 CALM2P0DP24 149 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 CALM3P0DP25 149 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 GNAT1P11488 350 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 MYCLP12524 364 aaPredicted RBP14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 STK3Q13188 491 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 RUFY4Q6ZNE9 571 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 FBXL16Q8N461 479 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 KREMEN2Q8NCW0 462 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 PNMA1Q8ND90 353 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 LMBR1Q8WVP7 490 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 AGXT2Q9BYV1 514 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 MLXIPQ9HAP2 919 aa14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 MRPL11Q9Y3B7 192 aaKnown RBP14.29□□□□□ -0.12
CLSTN3-208ENST00000538933 GOLGA8AA7E2F4 631 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 CD2BP2O95400 341 aaKnown RBP14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 CFBP00751 764 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 ARP10275 920 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 PGM5Q15124 567 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 DUSP6Q16828 381 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 OTOGLQ3ZCN5 2332 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 FBXO47Q5MNV8 452 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 ASTLQ6HA08 431 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 SYCE2Q6PIF2 218 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 SGMS1Q86VZ5 419 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 RAB11FIP4Q86YS3 637 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 UBALD2Q8IYN6 164 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 ZNF654Q8IZM8 581 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 CTCFLQ8NI51 663 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 RMDN1Q96DB5 314 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 ZFP91Q96JP5 570 aaPredicted RBP14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 SMOC2Q9H3U7 446 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 AGO3Q9H9G7 860 aaKnown RBP14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 JMJD4Q9H9V9 463 aa14.28□□□□□ -0.12
CLSTN3-208ENST00000538933 CPLX1O14810 134 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 DHX16O60231 1041 aaKnown RBP14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 DDAH1O94760 285 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 METAP2P50579 478 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 ARHGAP4P98171 946 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 CPLX2Q6PUV4 134 aaKnown RBP14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 APOA5Q6Q788 366 aa14.27□□□□□ -0.13
CLSTN3-208ENST00000538933 TRIM50Q86XT4 487 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms