RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MKRN4PQ13434 485 aaPredicted RBP16.74■□□□□ 0.27
USP28-204ENST00000537642 MOXD1Q6UVY6 613 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 TMCO2Q7Z6W1 182 aaPredicted RBP16.74■□□□□ 0.27
USP28-204ENST00000537642 RIT2Q99578 217 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 SLC28A3Q9HAS3 691 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 TCEAL9Q9UHQ7 104 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 LIMCH1Q9UPQ0 1083 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 PCDHA10Q9Y5I2 948 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 MAFBQ9Y5Q3 323 aaPredicted RBP16.74■□□□□ 0.27
USP28-204ENST00000537642 LOXHD1Q8IVV2 1947 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 CHD7Q9P2D1 2997 aa16.74■□□□□ 0.27
USP28-204ENST00000537642 EYSQ5T1H1 3165 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 CCDC194A0A1B0GVG4 234 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 WDR64B1ANS9 1081 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 GAS7O60861 476 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 PSMD10O75832 226 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 CA3P07451 260 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 PSAPP07602 524 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 FOSL2P15408 326 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 EARS2Q5JPH6 523 aaKnown RBP16.73■□□□□ 0.27
USP28-204ENST00000537642 LRCH2Q5VUJ6 765 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 PPP2R2DQ66LE6 453 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP28-204ENST00000537642 RSPH3Q86UC2 560 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 ETNPPLQ8TBG4 499 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 SEPT8Q92599 483 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 TEKT3Q9BXF9 490 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 FAM49AQ9H0Q0 323 aaPredicted RBP16.73■□□□□ 0.27
USP28-204ENST00000537642 UNC45AQ9H3U1 944 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 PRDM12Q9H4Q4 367 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 DISC1Q9NRI5 854 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 GABBR1Q9UBS5 961 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 PCDHA2Q9Y5H9 948 aa16.73■□□□□ 0.27
USP28-204ENST00000537642 IGSF9BQ9UPX0 1349 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 ZBTB42B2RXF5 422 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 SLC37A4O43826 429 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 ARHGEF15O94989 841 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 RBM25P49756 843 aaKnown RBP16.72■□□□□ 0.27
USP28-204ENST00000537642 MRPS6P82932 125 aaKnown RBP16.72■□□□□ 0.27
USP28-204ENST00000537642 LETM2Q2VYF4 491 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 MTHFD1LQ6UB35 978 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 PIK3AP1Q6ZUJ8 805 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 DDX25Q9UHL0 483 aaKnown RBP16.72■□□□□ 0.27
USP28-204ENST00000537642 SAMM50Q9Y512 469 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 CDY2AQ9Y6F7 541 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 COL1A2P08123 1366 aa16.72■□□□□ 0.27
USP28-204ENST00000537642 SMIM35A0A1B0GVV1 85 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 FAM205CA6NFA0 338 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 KIF28PB7ZC32 967 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 CHMP2AO43633 222 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 TLL1O43897 1013 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 GJB5O95377 273 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 RPLP2P05387 115 aaKnown RBP16.71■□□□□ 0.27
USP28-204ENST00000537642 GHRP10912 638 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 KLRC1P26715 233 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 KRT2P35908 639 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 FOSBP53539 338 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 NR5A1Q13285 461 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 LPIN1Q14693 890 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 ZNF484Q5JVG2 852 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 B3GNT9Q6UX72 402 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 NEK8Q86SG6 692 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 CCDC83Q8IWF9 413 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 CKAP2LQ8IYA6 745 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 BBXQ8WY36 941 aaPredicted RBP16.71■□□□□ 0.27
USP28-204ENST00000537642 TNFRSF25Q93038 417 aa16.71■□□□□ 0.27
USP28-204ENST00000537642 IFIH1Q9BYX4 1025 aaKnown RBP16.71■□□□□ 0.27
USP28-204ENST00000537642 LCHNA4D1U4 455 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 ZNF862O60290 1169 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 SFNP31947 248 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 JAK3P52333 1124 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 TAP1Q03518 808 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 TMEM62Q0P6H9 643 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 UGCGQ16739 394 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 FBXO47Q5MNV8 452 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 PPP4R3AQ6IN85 833 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 TRMT1LQ7Z2T5 733 aaKnown RBP16.7■□□□□ 0.26
USP28-204ENST00000537642 MAFAQ8NHW3 353 aaPredicted RBP16.7■□□□□ 0.26
USP28-204ENST00000537642 APBB2Q92870 758 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 ZBED2Q9BTP6 218 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 KCNMB3Q9NPA1 279 aa16.7■□□□□ 0.26
USP28-204ENST00000537642 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.69■□□□□ 0.26
USP28-204ENST00000537642 C22orf31O95567 290 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 MMP1P03956 469 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 AMHP03971 560 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 GCFC2P16383 781 aaKnown RBP16.69■□□□□ 0.26
USP28-204ENST00000537642 ADGRE1Q14246 886 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 IER5Q5VY09 327 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 KRT40Q6A162 431 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 FAM117BQ6P1L5 589 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 MIER3Q7Z3K6 550 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 MYOCDQ8IZQ8 938 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 RDM1Q8NG50 284 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 FAM167AQ96KS9 214 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
USP28-204ENST00000537642 GAS2L1Q99501 681 aaPredicted RBP16.69■□□□□ 0.26
USP28-204ENST00000537642 RAD9AQ99638 391 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 AGO3Q9H9G7 860 aaKnown RBP16.69■□□□□ 0.26
USP28-204ENST00000537642 BRMS1Q9HCU9 246 aa16.69■□□□□ 0.26
USP28-204ENST00000537642 TRPV2Q9Y5S1 764 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms