RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 ATG7O95352 703 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 CPA1P15085 419 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 CD52P31358 61 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 TMEM62Q0P6H9 643 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 PAK2Q13177 524 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 CCDC148Q8NFR7 591 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 BICD2Q8TD16 824 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 TRAPPC12Q8WVT3 735 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 KCNB2Q92953 911 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 ZNF577Q9BSK1 485 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 C11orf84Q9BUA3 381 aaPredicted RBP15.83■□□□□ 0.12
SYNE1-235ENST00000537033 ZMYND12Q9H0C1 365 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 SNX14Q9Y5W7 946 aa15.83■□□□□ 0.12
SYNE1-235ENST00000537033 MYH9P35579 1960 aaKnown RBP15.82■□□□□ 0.12
SYNE1-235ENST00000537033 TTC3P53804 2025 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 SMIM35A0A1B0GVV1 85 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 FAM86B1E9PN63 330 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 ENPP3O14638 875 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 PRPF3O43395 683 aaKnown RBP15.82■□□□□ 0.12
SYNE1-235ENST00000537033 HBP1O60381 514 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 CCNE2O96020 404 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 CYP3A4P08684 503 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 FAM86B2P0C5J1 330 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 KCNA5P22460 613 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 RPS6KB1P23443 525 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 BTG3Q14201 252 aaPredicted RBP15.82■□□□□ 0.12
SYNE1-235ENST00000537033 PDXDC2PQ6P474 469 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 MTHFD1LQ6UB35 978 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 NME8Q8N427 588 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 BANK1Q8NDB2 785 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 ATP8B4Q8TF62 1192 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 ZBTB10Q96DT7 871 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 C1QTNF1Q9BXJ1 281 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 ZNF302Q9NR11 478 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 TBC1D22BQ9NU19 505 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 COL1A2P08123 1366 aa15.82■□□□□ 0.12
SYNE1-235ENST00000537033 BDP1A6H8Y1 2624 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 IGKV6D-21A0A0A0MT36 114 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 RB1P06400 928 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 STAG3L1P0CL83 205 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 KRT76Q01546 638 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 LEXMQ3ZCV2 418 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 ABHD15Q6UXT9 468 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 CKAP2LQ8IYA6 745 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 FBXL16Q8N461 479 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 CELF4Q9BZC1 486 aaKnown RBP15.81■□□□□ 0.12
SYNE1-235ENST00000537033 LMAN2LQ9H0V9 348 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 NSUN3Q9H649 340 aaKnown RBP15.81■□□□□ 0.12
SYNE1-235ENST00000537033 AGO3Q9H9G7 860 aaKnown RBP15.81■□□□□ 0.12
SYNE1-235ENST00000537033 IGSF9BQ9UPX0 1349 aa15.81■□□□□ 0.12
SYNE1-235ENST00000537033 KDM3AQ9Y4C1 1321 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 IGLV3-22A0A075B6J6 115 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 C5orf67F2Z3F1 127 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 COL9A1P20849 921 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 BMPR1AP36894 532 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 PUS10Q3MIT2 529 aaKnown RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 ZNF484Q5JVG2 852 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 ODR4Q5SWX8 454 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 ZNF746Q6NUN9 644 aaPredicted RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 NPAS4Q8IUM7 802 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 CCDC60Q8IWA6 550 aaPredicted RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 SMAP1Q8IYB5 467 aaPredicted RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 CRYGNQ8WXF5 182 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 PHKBQ93100 1093 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 SLC26A6Q9BXS9 759 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 RNF26Q9BY78 433 aaPredicted RBP15.8■□□□□ 0.12
SYNE1-235ENST00000537033 LRFN2Q9ULH4 789 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 PADI3Q9ULW8 664 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 GINS2Q9Y248 185 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 BRWD1Q9NSI6 2320 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 KIAA1671Q9BY89 1806 aa15.8■□□□□ 0.12
SYNE1-235ENST00000537033 ATG2AQ2TAZ0 1938 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 DGKIO75912 1065 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 PSAPP07602 524 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 KLRC1P26715 233 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 PKN1Q16512 942 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 PRR16Q569H4 304 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 TCEAL5Q5H9L2 206 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 SWSAP1Q6NVH7 229 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 FAM43BQ6ZT52 329 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-235ENST00000537033 EP400NLQ6ZTU2 488 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 TRIM22Q8IYM9 498 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 LINC01599Q8WXQ3 324 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 CLP1Q92989 425 aaKnown RBP15.79■□□□□ 0.12
SYNE1-235ENST00000537033 PLVAPQ9BX97 442 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 AGXT2Q9BYV1 514 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 RC3H2Q9HBD1 1191 aaKnown RBP15.79■□□□□ 0.12
SYNE1-235ENST00000537033 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-235ENST00000537033 CEP131Q9UPN4 1083 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 FAM50BQ9Y247 325 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 SAMM50Q9Y512 469 aa15.79■□□□□ 0.12
SYNE1-235ENST00000537033 EVPLQ92817 2033 aa15.78■□□□□ 0.12
SYNE1-235ENST00000537033 DHX15O43143 795 aaKnown RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 NCK2O43639 380 aa15.78■□□□□ 0.12
SYNE1-235ENST00000537033 NFX1Q12986 1120 aaKnown RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 PTCRAQ6ISU1 281 aaPredicted RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 CMTR2Q8IYT2 770 aaKnown RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 BBXQ8WY36 941 aaPredicted RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 ZNF689Q96CS4 500 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms