RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 KRT32Q14532 448 aa17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 MARCH8Q5T0T0 291 aa17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 HEATR3Q7Z4Q2 680 aa17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 LINC01599Q8WXQ3 324 aa17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 JPH1Q9HDC5 661 aaPredicted RBP17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 UBIAD1Q9Y5Z9 338 aa17.98■□□□□ 0.47
CHMP4A-207ENST00000533523 TBX10O75333 385 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 IBSPP21815 317 aaPredicted RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 GTF2F1P35269 517 aaKnown RBP eCLIP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 TMEM62Q0P6H9 643 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 TCF15Q12870 199 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 PAN2Q504Q3 1202 aaKnown RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 CCDC82Q8N4S0 544 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 ZNF689Q96CS4 500 aaPredicted RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 POP1Q99575 1024 aaKnown RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 KCNH6Q9H252 994 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 AZI2Q9H6S1 392 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 AGO3Q9H9G7 860 aaKnown RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 TRPV2Q9Y5S1 764 aa17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 MRPL42Q9Y6G3 142 aaKnown RBP17.97■□□□□ 0.47
CHMP4A-207ENST00000533523 ZNF292O60281 2723 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 RRN3P2A6NIE6 340 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 LINC01565O15544 149 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 DGKIO75912 1065 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 CALM1P0DP23 149 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 CALM2P0DP24 149 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 CALM3P0DP25 149 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 INSRRP14616 1297 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 NDUFV1P49821 464 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 PAK2Q13177 524 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 SMAD4Q13485 552 aaKnown RBP17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 CTC1Q2NKJ3 1217 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 IER5Q5VY09 327 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 MICU3Q86XE3 530 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 NPAS4Q8IUM7 802 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 TRAPPC12Q8WVT3 735 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 PLVAPQ9BX97 442 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 LRRC2Q9BYS8 371 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 JADE2Q9NQC1 790 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 SLC9A2Q9UBY0 812 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 PCDHA6Q9UN73 950 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 PCDHA8Q9Y5H6 950 aa17.96■□□□□ 0.47
CHMP4A-207ENST00000533523 MBTPS2O43462 519 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 RPLP2P05387 115 aaKnown RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 LIFRP42702 1097 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 COL9A3Q14050 684 aaPredicted RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 SMAD2Q15796 467 aaKnown RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 TSGA10IPQ3SY00 556 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 TMTC3Q6ZXV5 915 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 CMTR2Q8IYT2 770 aaKnown RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 PPP2R3CQ969Q6 453 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 NEK1Q96PY6 1258 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 PCYT2Q99447 389 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 SDF4Q9BRK5 362 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 UPF3BQ9BZI7 483 aaKnown RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 UPF2Q9HAU5 1272 aaKnown RBP17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 CD207Q9UJ71 328 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 SLC12A7Q9Y666 1083 aa17.95■□□□□ 0.46
CHMP4A-207ENST00000533523 SCG2P13521 617 aa17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 HERC4Q5GLZ8 1057 aaPredicted RBP17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 PGBD1Q96JS3 809 aa17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 FTHL17Q9BXU8 183 aa17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 PLAGL2Q9UPG8 496 aa17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 RIF1Q5UIP0 2472 aaKnown RBP17.94■□□□□ 0.46
CHMP4A-207ENST00000533523 STXBP3O00186 592 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 EPB41L2O43491 1005 aaKnown RBP17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 ITGB1P05556 798 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 HMGB1P09429 215 aaKnown RBP17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 STAG3L1P0CL83 205 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 DNAJB1P25685 340 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 GATMP50440 423 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 ACTR2P61160 394 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 PLCB4Q15147 1175 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 ADGRD2Q7Z7M1 963 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 RNF135Q8IUD6 432 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 TNPO1Q92973 898 aaKnown RBP17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 P2RX5Q93086 422 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 MXRA8Q9BRK3 442 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 KCNH7Q9NS40 1196 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 LRFN2Q9ULH4 789 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 PADI3Q9ULW8 664 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 CNTNAP5Q8WYK1 1306 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 IGSF9BQ9UPX0 1349 aa17.93■□□□□ 0.46
CHMP4A-207ENST00000533523 GVINP1Q7Z2Y8 2422 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 MAFGO15525 162 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 NAPAP54920 295 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 TMEM266Q2M3C6 531 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 WWC2Q6AWC2 1192 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 SYNE3Q6ZMZ3 975 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 DHX32Q7L7V1 743 aaKnown RBP17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 KLHL23Q8NBE8 558 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 TSHZ2Q9NRE2 1034 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 FAM86C1Q9NVL1 165 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 GINS2Q9Y248 185 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 PCDHA2Q9Y5H9 948 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 NFASCO94856 1347 aa17.92■□□□□ 0.46
CHMP4A-207ENST00000533523 HSPA4P34932 840 aa17.91■□□□□ 0.46
CHMP4A-207ENST00000533523 NRIP1P48552 1158 aa17.91■□□□□ 0.46
CHMP4A-207ENST00000533523 STAT5BP51692 787 aa17.91■□□□□ 0.46
CHMP4A-207ENST00000533523 ADCY7P51828 1080 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms