RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ORC2Q13416 577 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-208ENST00000532560 MARCH8Q5T0T0 291 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 ZNF618Q5T7W0 954 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 RASIP1Q5U651 963 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 RPAINQ86UA6 219 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 BBXQ8WY36 941 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-208ENST00000532560 FAM167AQ96KS9 214 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 GABBR1Q9UBS5 961 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 BAG4O95429 457 aaKnown RBP16.94■□□□□ 0.3
CPSF1-208ENST00000532560 RPLP2P05387 115 aaKnown RBP16.94■□□□□ 0.3
CPSF1-208ENST00000532560 IGBP1P78318 339 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 CALCRLQ16602 461 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 RUFY4Q6ZNE9 571 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 ZNF365Q70YC5 407 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 CKAP2LQ8IYA6 745 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 HERVK_113Q902F9 699 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 SNX21Q969T3 373 aa16.94■□□□□ 0.3
CPSF1-208ENST00000532560 ZBTB42B2RXF5 422 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 K7ELQ4 463 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-208ENST00000532560 SOX1O00570 391 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-208ENST00000532560 ZNF862O60290 1169 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 MARCH6O60337 910 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 FGBP02675 491 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 CXCL10P02778 98 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 OATP04181 439 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 PRKCEQ02156 737 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 SPIRE1Q08AE8 756 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 GPNMBQ14956 572 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 UGCGQ16739 394 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 ZNF484Q5JVG2 852 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 DEFB128Q7Z7B8 93 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 TRAPPC12Q8WVT3 735 aa16.93■□□□□ 0.3
CPSF1-208ENST00000532560 INTS4Q96HW7 963 aaKnown RBP16.93■□□□□ 0.3
CPSF1-208ENST00000532560 MTIF3Q9H2K0 278 aaKnown RBP16.93■□□□□ 0.3
CPSF1-208ENST00000532560 NOL7Q9UMY1 257 aaKnown RBP16.93■□□□□ 0.3
CPSF1-208ENST00000532560 RSPH10B2B2RC85 870 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 H3BQV1 296 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 EML1O00423 815 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 NBNO60934 754 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 RSPH10BP0C881 870 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 MCM7P33993 719 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 MBTPS1Q14703 1052 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 FAM26DQ5JW98 314 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 TTC38Q5R3I4 469 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 RSPH3Q86UC2 560 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 MTMR9Q96QG7 549 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 CEP131Q9UPN4 1083 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 PCDHA2Q9Y5H9 948 aa16.92■□□□□ 0.3
CPSF1-208ENST00000532560 SMIM35A0A1B0GVV1 85 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 CTSHP09668 335 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 ACTN1P12814 892 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 ATP2B1P20020 1258 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 LARP1BQ659C4 914 aaKnown RBP16.91■□□□□ 0.3
CPSF1-208ENST00000532560 MTHFD1LQ6UB35 978 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 TET1Q8NFU7 2136 aa16.91■□□□□ 0.3
CPSF1-208ENST00000532560 BAIAP3O94812 1187 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 C22orf31O95567 290 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 PSMC5P62195 406 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 SMAD3P84022 425 aaKnown RBP16.9■□□□□ 0.3
CPSF1-208ENST00000532560 EPHA7Q15375 998 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 XKR3Q5GH77 459 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 MCTP1Q6DN14 999 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 NCAPH2Q6IBW4 605 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 CNKSR3Q6P9H4 555 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 OTOP2Q7RTS6 562 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 BANK1Q8NDB2 785 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 DNAJB3Q8WWF6 145 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 ZBTB10Q96DT7 871 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 FTOQ9C0B1 505 aaKnown RBP eCLIP16.9■□□□□ 0.3
CPSF1-208ENST00000532560 TMEM60Q9H2L4 133 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 TTC12Q9H892 705 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-208ENST00000532560 NRBP2Q9NSY0 501 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 CXXC1Q9P0U4 656 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-208ENST00000532560 PCDHA12Q9UN75 941 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 SIP14410 1827 aa16.9■□□□□ 0.3
CPSF1-208ENST00000532560 DKC1O60832 514 aaKnown RBP eCLIP16.89■□□□□ 0.29
CPSF1-208ENST00000532560 P4HBP07237 508 aaKnown RBP16.89■□□□□ 0.29
CPSF1-208ENST00000532560 OR52Z1P0C646 297 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 PDCP20941 246 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 KLRC1P26715 233 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 QARSP47897 775 aaKnown RBP16.89■□□□□ 0.29
CPSF1-208ENST00000532560 TOB1P50616 345 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-208ENST00000532560 MGAT3Q09327 533 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 ZNF174Q15697 407 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 GPR153Q6NV75 609 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 LRCH3Q96II8 777 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 FAM49AQ9H0Q0 323 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-208ENST00000532560 LAMA3Q16787 3333 aa16.89■□□□□ 0.29
CPSF1-208ENST00000532560 MAGEB2O15479 319 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 STBD1O95210 358 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 CHRNA1P02708 482 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 TXKP42681 527 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 MRPS6P82932 125 aaKnown RBP16.88■□□□□ 0.29
CPSF1-208ENST00000532560 RILPL1Q5EBL4 403 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 TRMT1LQ7Z2T5 733 aaKnown RBP16.88■□□□□ 0.29
CPSF1-208ENST00000532560 HSCBQ8IWL3 235 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 NME8Q8N427 588 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 NEK9Q8TD19 979 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 LXNQ9BS40 222 aa16.88■□□□□ 0.29
CPSF1-208ENST00000532560 NIFKQ9BYG3 293 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms