RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 REXO1Q8N1G1 1221 aaKnown RBP16.75■□□□□ 0.27
VPS28-215ENST00000531924 BICD2Q8TD16 824 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 ZNF577Q9BSK1 485 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 C11orf84Q9BUA3 381 aaPredicted RBP16.75■□□□□ 0.27
VPS28-215ENST00000531924 ZNF302Q9NR11 478 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 GINS2Q9Y248 185 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 SQORQ9Y6N5 450 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 ADGRA3Q8IWK6 1321 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 MICAL3Q7RTP6 2002 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 SMIM35A0A1B0GVV1 85 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 IPO5O00410 1097 aaKnown RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 HBP1O60381 514 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 STAG3L1P0CL83 205 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 IBSPP21815 317 aaPredicted RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 HSPA4P34932 840 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 BMPR1AP36894 532 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 CLK2P49760 499 aaKnown RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 SETQ01105 290 aaPredicted RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 MTHFD1LQ6UB35 978 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 UIMC1Q96RL1 719 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 CELF4Q9BZC1 486 aaKnown RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 NSUN3Q9H649 340 aaKnown RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 AGO3Q9H9G7 860 aaKnown RBP16.74■□□□□ 0.27
VPS28-215ENST00000531924 TBC1D22BQ9NU19 505 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 LRFN2Q9ULH4 789 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 SNX14Q9Y5W7 946 aa16.74■□□□□ 0.27
VPS28-215ENST00000531924 ESYT2A0FGR8 921 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 FAM86B1E9PN63 330 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 PRPF3O43395 683 aaKnown RBP16.73■□□□□ 0.27
VPS28-215ENST00000531924 ATG7O95352 703 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 CCNE2O96020 404 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 FAM86B2P0C5J1 330 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 RPS6KB1P23443 525 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 KLRC1P26715 233 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 PUS10Q3MIT2 529 aaKnown RBP16.73■□□□□ 0.27
VPS28-215ENST00000531924 LEXMQ3ZCV2 418 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 ZNF484Q5JVG2 852 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 SWSAP1Q6NVH7 229 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 ABHD15Q6UXT9 468 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 CCDC148Q8NFR7 591 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 ATP8B4Q8TF62 1192 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 KCNB2Q92953 911 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 SLC26A6Q9BXS9 759 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 ZMYND12Q9H0C1 365 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 PADI3Q9ULW8 664 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 FAM50BQ9Y247 325 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 SAMM50Q9Y512 469 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 KAT6AQ92794 2004 aa16.73■□□□□ 0.27
VPS28-215ENST00000531924 TCF20Q9UGU0 1960 aaKnown RBP16.72■□□□□ 0.27
VPS28-215ENST00000531924 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.72■□□□□ 0.27
VPS28-215ENST00000531924 NCK2O43639 380 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 CYP3A4P08684 503 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 NFX1Q12986 1120 aaKnown RBP16.72■□□□□ 0.27
VPS28-215ENST00000531924 PRR16Q569H4 304 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 TCEAL5Q5H9L2 206 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 ODR4Q5SWX8 454 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 PTCRAQ6ISU1 281 aaPredicted RBP16.72■□□□□ 0.27
VPS28-215ENST00000531924 NPAS4Q8IUM7 802 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 PHKBQ93100 1093 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 LMAN2LQ9H0V9 348 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 RNF216Q9NWF9 866 aaPredicted RBP16.72■□□□□ 0.27
VPS28-215ENST00000531924 SIP14410 1827 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 MUC3AQ02505 3323 aa16.72■□□□□ 0.27
VPS28-215ENST00000531924 IGSF9BQ9UPX0 1349 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 IGKV6D-21A0A0A0MT36 114 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 DGKIO75912 1065 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 PSAPP07602 524 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 SSTR3P32745 418 aaPredicted RBP16.71■□□□□ 0.27
VPS28-215ENST00000531924 ZNF746Q6NUN9 644 aaPredicted RBP16.71■□□□□ 0.27
VPS28-215ENST00000531924 TRMT1LQ7Z2T5 733 aaKnown RBP16.71■□□□□ 0.27
VPS28-215ENST00000531924 CCDC60Q8IWA6 550 aaPredicted RBP16.71■□□□□ 0.27
VPS28-215ENST00000531924 SMAP1Q8IYB5 467 aaPredicted RBP16.71■□□□□ 0.27
VPS28-215ENST00000531924 TRIM22Q8IYM9 498 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 METTL13Q8N6R0 699 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 COL1A2P08123 1366 aa16.71■□□□□ 0.27
VPS28-215ENST00000531924 NCOR1O75376 2440 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 IGLV3-22A0A075B6J6 115 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 DENND3A2RUS2 1198 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 C5orf67F2Z3F1 127 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 H3BQ06 376 aaPredicted RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 PPFIA3O75145 1194 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 RPS6KA5O75582 802 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 CSPG5O95196 566 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 TMEM266Q2M3C6 531 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 PAN2Q504Q3 1202 aaKnown RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 CMTR2Q8IYT2 770 aaKnown RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 CLP1Q92989 425 aaKnown RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 PABPC5Q96DU9 382 aaKnown RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 PLVAPQ9BX97 442 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 RNF26Q9BY78 433 aaPredicted RBP16.7■□□□□ 0.26
VPS28-215ENST00000531924 CLDND1Q9NY35 253 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 CEP131Q9UPN4 1083 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 PCDHB7Q9Y5E2 793 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 PCDHA10Q9Y5I2 948 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 KDM3AQ9Y4C1 1321 aa16.7■□□□□ 0.26
VPS28-215ENST00000531924 COL4A6Q14031 1691 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 CPLX1O14810 134 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 DHX15O43143 795 aaKnown RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 NLRP5P59047 1200 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 CCT2P78371 535 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms