RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ACSS2Q9NR19 701 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 CHST12Q9NRB3 414 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 C19orf73Q9NVV2 129 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 MKS1Q9NXB0 559 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 ASH2LQ9UBL3 628 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 PNMA8BQ9ULN7 279 aaPredicted RBP3.93□□□□□ -1.78
CD44-234ENST00000531873 ZNF652Q9Y2D9 606 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 GIT1Q9Y2X7 761 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 RIPOR2Q9Y4F9 1068 aa3.93□□□□□ -1.78
CD44-234ENST00000531873 ARID4BQ4LE39 1312 aaPredicted RBP3.93□□□□□ -1.78
CD44-234ENST00000531873 VSTM5A8MXK1 200 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 ACOT7O00154 380 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 KRIT1O00522 736 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 SGSM2O43147 1006 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 BUB1BO60566 1050 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 CAND2O75155 1236 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 TSPAN15O95858 294 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 CFBP00751 764 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 CYP17A1P05093 508 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 PRKCAP17252 672 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 LPOP22079 712 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 CD40P25942 277 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 THBS2P35442 1172 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 RAP1GAPP47736 663 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 FNTBP49356 437 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 MANFP55145 182 aaKnown RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 RBM10P98175 930 aaKnown RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 TUSC3Q13454 348 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 UBE4AQ14139 1066 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 GALEQ14376 348 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 TMEM132BQ14DG7 1078 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 EPHA7Q15375 998 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 GFOD2Q3B7J2 385 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 GALNT18Q6P9A2 607 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 PNMA8AQ86V59 439 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 CXorf67Q86X51 503 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 DGKHQ86XP1 1220 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 NLGN4XQ8N0W4 816 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 PDZD8Q8NEN9 1154 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 NUP43Q8NFH3 380 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 USP33Q8TEY7 942 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 TGFBRAP1Q8WUH2 860 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 CLEC4DQ8WXI8 215 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 JADE3Q92613 823 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 TEKT5Q96M29 485 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 POLR3GLQ9BT43 218 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 PDGFDQ9GZP0 370 aaPredicted RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 SMOC1Q9H4F8 434 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 RC3H2Q9HBD1 1191 aaKnown RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 TNFRSF12AQ9NP84 129 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 MBNL3Q9NUK0 354 aaKnown RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 OBP2AQ9NY56 170 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 FAM53CQ9NYF3 392 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 MYOTQ9UBF9 498 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 JAG2Q9Y219 1238 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 ANKRD6Q9Y2G4 727 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 SIT1Q9Y3P8 196 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 NOC2LQ9Y3T9 749 aaKnown RBP3.92□□□□□ -1.78
CD44-234ENST00000531873 PPP2R3BQ9Y5P8 575 aa3.92□□□□□ -1.78
CD44-234ENST00000531873 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 TCRBV5S2A0A599 114 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 PLEKHD1A6NEE1 506 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 GOLGA8AA7E2F4 631 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 GOLGA8BA8MQT2 603 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 HGSO14964 777 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 XPOTO43592 962 aaKnown RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 PSPNO60542 156 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 MYL1P05976 194 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 ASGR2P07307 311 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 RNASE1P07998 156 aaKnown RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 CT47B1P0C2W7 299 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 CCND1P24385 295 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 GJA4P35212 333 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 MTNR1BP49286 362 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 HK2P52789 917 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 ERVFC1P60507 584 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 CHRNEQ04844 493 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 HLTFQ14527 1009 aaKnown RBP eCLIP3.91□□□□□ -1.78
CD44-234ENST00000531873 NR0B2Q15466 257 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 CHRNA2Q15822 529 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 ZBTB41Q5SVQ8 909 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 B3GNT9Q6UX72 402 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 FRMD7Q6ZUT3 714 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 RTN4RL1Q86UN2 441 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 NLRX1Q86UT6 975 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 DCP2Q8IU60 420 aaKnown RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 CERS3Q8IU89 383 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 ZZZ3Q8IYH5 903 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 NETO2Q8NC67 525 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 PHOSPHO1Q8TCT1 267 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 SYTL4Q96C24 671 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 TIFAQ96CG3 184 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 FOXRED1Q96CU9 486 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 SHISA4Q96DD7 197 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 HSPBAP1Q96EW2 488 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 AIFM3Q96NN9 605 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 ACAP3Q96P50 834 aa3.91□□□□□ -1.78
CD44-234ENST00000531873 NUP88Q99567 741 aaPredicted RBP3.91□□□□□ -1.78
CD44-234ENST00000531873 RXFP1Q9HBX9 757 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms