RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 KRT15P19012 456 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 SDHAP31040 664 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 THBS2P35442 1172 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 JAG1P78504 1218 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 DBPQ10586 325 aaPredicted RBP6.83□□□□□ -1.32
CD44-231ENST00000531110 ADAM9Q13443 819 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 CD276Q5ZPR3 534 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 EGFLAMQ63HQ2 1017 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 VASNQ6EMK4 673 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 DTX3Q8N9I9 347 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 B4GALT6Q9UBX8 382 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 SH3BP1Q9Y3L3 701 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 PRKAB1Q9Y478 270 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 NCAPD3P42695 1498 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 CADPSQ9ULU8 1353 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 TRAF5O00463 557 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 SMARCA5O60264 1052 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 HIP1RO75146 1068 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 C4BPAP04003 597 aaKnown RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 ZSCAN20P17040 1043 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 RPL13P26373 211 aaKnown RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 GYS2P54840 703 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 MAP2K1Q02750 393 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 GRIN1Q05586 938 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 HDAC1Q13547 482 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 PRR31Q5SQ13 230 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 PIK3R6Q5UE93 754 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 CC2D1AQ6P1N0 951 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 ZBTB8AQ96BR9 441 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 CLIC6Q96NY7 704 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 NOX5Q96PH1 765 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 IRF2BPLQ9H1B7 796 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 RRAGDQ9NQL2 400 aaPredicted RBP6.82□□□□□ -1.32
CD44-231ENST00000531110 RIC8BQ9NVN3 520 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 NTMQ9P121 344 aa6.82□□□□□ -1.32
CD44-231ENST00000531110 A0A087X0B3 334 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 ZNF839A8K0R7 811 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 GSG1L2A8MUP6 293 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 GOLIM4O00461 696 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 KIF1CO43896 1103 aaKnown RBP6.81□□□□□ -1.32
CD44-231ENST00000531110 ZBTB48P10074 688 aaPredicted RBP6.81□□□□□ -1.32
CD44-231ENST00000531110 AOAHP28039 575 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 FNTBP49356 437 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 IRF9Q00978 393 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 TTLL7Q6ZT98 887 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 RBM12BQ8IXT5 1001 aaKnown RBP6.81□□□□□ -1.32
CD44-231ENST00000531110 IGDCC4Q8TDY8 1250 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 SNRNP27Q8WVK2 155 aaKnown RBP6.81□□□□□ -1.32
CD44-231ENST00000531110 FAM210AQ96ND0 272 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 PHLDB1Q86UU1 1377 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 NINLQ9Y2I6 1382 aa6.81□□□□□ -1.32
CD44-231ENST00000531110 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.8□□□□□ -1.32
CD44-231ENST00000531110 FFAR3O14843 346 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 F2P00734 622 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 LIPIQ6XZB0 460 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 TMTC2Q8N394 836 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 TARS2Q9BW92 718 aaKnown RBP6.8□□□□□ -1.32
CD44-231ENST00000531110 MTFR1LQ9H019 292 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 LUC7LQ9NQ29 371 aaKnown RBP6.8□□□□□ -1.32
CD44-231ENST00000531110 ACSS2Q9NR19 701 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 SPATA6Q9NWH7 488 aaPredicted RBP6.8□□□□□ -1.32
CD44-231ENST00000531110 WASF3Q9UPY6 502 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 ASB1Q9Y576 335 aa6.8□□□□□ -1.32
CD44-231ENST00000531110 UNC13AQ9UPW8 1703 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 HMGB1P1B2RPK0 211 aaPredicted RBP6.79□□□□□ -1.32
CD44-231ENST00000531110 DYNC1I1O14576 645 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 NEK4P51957 841 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 SEC23AQ15436 765 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 SP8Q8IXZ3 490 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 SCYL1Q96KG9 808 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 CCDC94Q9BW85 323 aaPredicted RBP6.79□□□□□ -1.32
CD44-231ENST00000531110 ZKSCAN5Q9Y2L8 839 aa6.79□□□□□ -1.32
CD44-231ENST00000531110 ZBED9Q6R2W3 1325 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 WRNQ14191 1432 aaPredicted RBP eCLIP6.78□□□□□ -1.32
CD44-231ENST00000531110 KRTAP9-6A0A140TA67 174 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 PTPDC1A2A3K4 754 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 H7C1D1 291 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 SCDO00767 359 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 PDE8AO60658 829 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 MAFO75444 373 aaPredicted RBP6.78□□□□□ -1.32
CD44-231ENST00000531110 CYP17A1P05093 508 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 VIL1P09327 827 aaKnown RBP6.78□□□□□ -1.32
CD44-231ENST00000531110 ZSCAN22P10073 491 aaPredicted RBP6.78□□□□□ -1.32
CD44-231ENST00000531110 ZNF28P17035 718 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 PFKPQ01813 784 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 DSG1Q02413 1049 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 MTA1Q13330 715 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 C21orf62-AS1Q17RA5 79 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 SKIDA1Q1XH10 827 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 FAM26FQ5R3K3 315 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 CNNM4Q6P4Q7 775 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 PKN3Q6P5Z2 889 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 RPAINQ86UA6 219 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 THNSL2Q86YJ6 484 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 CARFQ8N187 725 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 TP53I13Q8NBR0 393 aaPredicted RBP6.78□□□□□ -1.32
CD44-231ENST00000531110 MNS1Q8NEH6 495 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 FRAT1Q92837 279 aaPredicted RBP6.78□□□□□ -1.32
CD44-231ENST00000531110 TSPAN18Q96SJ8 248 aa6.78□□□□□ -1.32
CD44-231ENST00000531110 BTBD7Q9P203 1132 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms