RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 HOMER2Q9NSB8 354 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 ADD3Q9UEY8 706 aaKnown RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 SRRDQ9UH36 339 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 MORC2Q9Y6X9 1032 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 MYH7BA7E2Y1 1941 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 DNAJC25-GNG10A0A024R161 153 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 LAD1O00515 517 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 EDIL3O43854 480 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 STAM2O75886 525 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 BAG4O95429 457 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 BMP15O95972 392 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 GCFC2P16383 781 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 CIITAP33076 1130 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 KRT85P78386 507 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 DNM1Q05193 864 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 SLC39A14Q15043 492 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 UBE2SQ16763 222 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.39□□□□□ -1.07
CD44-228ENST00000528455 EARS2Q5JPH6 523 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 ANO1Q5XXA6 986 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 FAM173BQ6P4H8 233 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 NSMFQ6X4W1 530 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 NEK8Q86SG6 692 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 VSIG10LQ86VR7 867 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 FCHSD1Q86WN1 690 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 FAM133AQ8N9E0 248 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 RAET1EQ8TD07 263 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 ZNF333Q96JL9 665 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 GBP4Q96PP9 640 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 TAAR1Q96RJ0 339 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 RMDN3Q96TC7 470 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 MPHOSPH6Q99547 160 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 TSPAN10Q9H1Z9 355 aaPredicted RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 PORCNQ9H237 461 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 A1CFQ9NQ94 594 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 TMEM260Q9NX78 707 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 SLC5A4Q9NY91 659 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 CEP131Q9UPN4 1083 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 DIS3Q9Y2L1 958 aaKnown RBP8.39□□□□□ -1.07
CD44-228ENST00000528455 IVNS1ABPQ9Y6Y0 642 aa8.39□□□□□ -1.07
CD44-228ENST00000528455 KIAA0100Q14667 2235 aaKnown RBP8.38□□□□□ -1.07
CD44-228ENST00000528455 DOCK3Q8IZD9 2030 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 CARNS1A5YM72 827 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 SLC15A5A6NIM6 579 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 PEX10O60683 326 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 PPP6R2O75170 966 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 YEATS4O95619 227 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 CTGFP29279 349 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 NASPP49321 788 aaPredicted RBP8.38□□□□□ -1.07
CD44-228ENST00000528455 ARHGAP4P98171 946 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 POU4F2Q12837 409 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 SF3A1Q15459 793 aaKnown RBP8.38□□□□□ -1.07
CD44-228ENST00000528455 INF2Q27J81 1249 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 Q4G0T1 1027 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 TBCELQ5QJ74 424 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 TTC38Q5R3I4 469 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 ARHGEF16Q5VV41 709 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 PCNX4Q63HM2 1172 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 ARL6IP4Q66PJ3 421 aaKnown RBP8.38□□□□□ -1.07
CD44-228ENST00000528455 TMEM214Q6NUQ4 689 aaKnown RBP8.38□□□□□ -1.07
CD44-228ENST00000528455 NIPA1Q7RTP0 329 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 GPR142Q7Z601 462 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 PLEKHH3Q7Z736 793 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 SLC9A9Q8IVB4 645 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 C4orf32Q8N8J7 132 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 LINC00301Q8NCQ3 95 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 RASGRP4Q8TDF6 673 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 MBOAT7Q96N66 472 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 USP28Q96RU2 1077 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 MMP19Q99542 508 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 ANO3Q9BYT9 981 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 PXMP2Q9NR77 195 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 COL20A1Q9P218 1284 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 MYH15Q9Y2K3 1946 aa8.38□□□□□ -1.07
CD44-228ENST00000528455 FRMPD4Q14CM0 1322 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 RPTORQ8N122 1335 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 GOLGA6L22H0YM25 854 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 MEIS1O00470 390 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 TNPO2O14787 897 aaKnown RBP8.37□□□□□ -1.07
CD44-228ENST00000528455 TBX3O15119 743 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 CCNT1O60563 726 aaKnown RBP8.37□□□□□ -1.07
CD44-228ENST00000528455 EIF3JO75822 258 aaKnown RBP8.37□□□□□ -1.07
CD44-228ENST00000528455 RHOQP17081 205 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 WEE1P30291 646 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 GRK4P32298 578 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 ZNF76P36508 570 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PRKCZQ05513 592 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PDIA5Q14554 519 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PGM5Q15124 567 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PTPAQ15257 358 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 ZNF174Q15697 407 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 STXBP2Q15833 593 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 LETM2Q2VYF4 491 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 ZNF792Q3KQV3 632 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 C4orf17Q53FE4 359 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 MSL3Q8N5Y2 521 aaKnown RBP8.37□□□□□ -1.07
CD44-228ENST00000528455 KCNG4Q8TDN1 519 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 MORC4Q8TE76 937 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 RHBDD1Q8TEB9 315 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 SH3TC2Q8TF17 1288 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms