RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PRSS36Q5K4E3 855 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 CDC42EP5Q6NZY7 148 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 GPR142Q7Z601 462 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 CCDC112Q8NEF3 446 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 KIF18AQ8NI77 898 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 GOLGA5Q8TBA6 731 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 ASAP3Q8TDY4 903 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 SLC7A3Q8WY07 619 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 FERMT2Q96AC1 680 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 MEGF10Q96KG7 1140 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 FBXL18Q96ME1 805 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 BHLHE41Q9C0J9 482 aaPredicted RBP5.75□□□□□ -1.49
CD44-218ENST00000525469 MTIF3Q9H2K0 278 aaKnown RBP5.75□□□□□ -1.49
CD44-218ENST00000525469 AS3MTQ9HBK9 375 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 SH2B1Q9NRF2 756 aaPredicted RBP5.75□□□□□ -1.49
CD44-218ENST00000525469 TMOD4Q9NZQ9 345 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 JRKLQ9Y4A0 524 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 MRVI1Q9Y6F6 885 aa5.75□□□□□ -1.49
CD44-218ENST00000525469 ZNFX1Q9P2E3 1918 aaKnown RBP5.75□□□□□ -1.49
CD44-218ENST00000525469 CCDC171Q6TFL3 1326 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 GRXCR1A8MXD5 290 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 DCDC2CA8MYV0 355 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 KIAA0355O15063 1070 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 DHX15O43143 795 aaKnown RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 SART1O43290 800 aaKnown RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 PQBP1O60828 265 aaKnown RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 CAVIN2O95810 425 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 ATP2B1P20020 1258 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 U2AF2P26368 475 aaKnown RBP eCLIP5.74□□□□□ -1.49
CD44-218ENST00000525469 MAGEA9P43362 315 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 GSCP56915 257 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 CCNA1P78396 465 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 IRX1P78414 480 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 PPIGQ13427 754 aaKnown RBP eCLIP5.74□□□□□ -1.49
CD44-218ENST00000525469 SNX17Q15036 470 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 FOXD4L6Q3SYB3 417 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 HP1BP3Q5SSJ5 553 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 LRCH2Q5VUJ6 765 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 ANKRD34AQ69YU3 496 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 FOXD4L3Q6VB84 417 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 PRR23CQ6ZRP0 262 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 FMNL3Q8IVF7 1028 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 OTUD6BQ8N6M0 293 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 IQUBQ8NA54 791 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 SLC44A5Q8NCS7 719 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 GALNT11Q8NCW6 608 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 ANKRD20A12PQ8NF67 263 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 STAG1Q8WVM7 1258 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 NXPE3Q969Y0 559 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 KIF1BPQ96EK5 621 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 DMRTB1Q96MA1 342 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.74□□□□□ -1.49
CD44-218ENST00000525469 PAGR1Q9BTK6 254 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 STK31Q9BXU1 1019 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 NKX2-4Q9H2Z4 354 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 SOX17Q9H6I2 414 aaPredicted RBP5.74□□□□□ -1.49
CD44-218ENST00000525469 IGSF5Q9NSI5 407 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 FAM53CQ9NYF3 392 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 SOX13Q9UN79 622 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.74□□□□□ -1.49
CD44-218ENST00000525469 CDK5RAP2Q96SN8 1893 aa5.74□□□□□ -1.49
CD44-218ENST00000525469 RBM47A0AV96 593 aaKnown RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 MAFGO15525 162 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 CCP110O43303 1012 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 CPNE3O75131 537 aaKnown RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 SETSIPP0DME0 302 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 ITGB8P26012 769 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 HERVK_113P62684 666 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 ERVK-24P63145 666 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 ARHGAP4P98171 946 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 NFIAQ12857 509 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 WDR43Q15061 677 aaKnown RBP eCLIP5.73□□□□□ -1.49
CD44-218ENST00000525469 ANO1Q5XXA6 986 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 FDX2Q6P4F2 183 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 LEKR1Q6ZMV7 388 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 FBXO33Q7Z6M2 555 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 CCDC84Q86UT8 332 aaPredicted RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 TMEM199Q8N511 208 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 WDR66Q8TBY9 1149 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 USP6NLQ92738 828 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 UTP4Q969X6 686 aaKnown RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 DDX11Q96FC9 970 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 OSBPL5Q9H0X9 879 aaPredicted RBP5.73□□□□□ -1.49
CD44-218ENST00000525469 DNAJC25Q9H1X3 360 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 ZFYVE1Q9HBF4 777 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 DAGLAQ9Y4D2 1042 aa5.73□□□□□ -1.49
CD44-218ENST00000525469 SLC15A5A6NIM6 579 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 CTAGE5O15320 804 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 ENTPD3O75355 529 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 ALX3O95076 343 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 TIMP1P01033 207 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 ACPPP15309 386 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 LRRC41Q15345 812 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 TMEM240Q5SV17 173 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 JAKMIP3Q5VZ66 844 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 MCTP2Q6DN12 878 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 PSRC1Q6PGN9 363 aaPredicted RBP5.72□□□□□ -1.49
CD44-218ENST00000525469 LMBR1LQ6UX01 489 aa5.72□□□□□ -1.49
CD44-218ENST00000525469 FILIP1Q7Z7B0 1213 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms