RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CELA3BP08861 270 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 CSF2RBP32927 897 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 IRF9Q00978 393 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 BORAQ6PGQ7 559 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 GPR155Q7Z3F1 870 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 DDX53Q86TM3 631 aaKnown RBP5.99□□□□□ -1.45
CD44-217ENST00000525348 KBTBD2Q8IY47 623 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 SSBP3Q9BWW4 388 aaPredicted RBP5.99□□□□□ -1.45
CD44-217ENST00000525348 INCENPQ9NQS7 918 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 UCKL1Q9NWZ5 548 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 GALNT8Q9NY28 637 aa5.99□□□□□ -1.45
CD44-217ENST00000525348 H0Y858 1186 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 FOXP2O15409 715 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 KRT37O76014 449 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 PLATP00750 562 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 ITGB3P05106 788 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 JMJD7P0C870 316 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 SDHAP31040 664 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 PLP2Q04941 152 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 TMEM132BQ14DG7 1078 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 PIK3R6Q5UE93 754 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 CREB3L3Q68CJ9 461 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 CDCA2Q69YH5 1023 aaPredicted RBP5.98□□□□□ -1.45
CD44-217ENST00000525348 FAM124AQ86V42 546 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 HOMER1Q86YM7 354 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 CHST14Q8NCH0 376 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 AJUBAQ96IF1 538 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 GBP4Q96PP9 640 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 PTPN18Q99952 460 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 BOCQ9BWV1 1114 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 KRTAP4-9Q9BYQ8 210 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 KATNBL1Q9H079 304 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 ZDHHC9Q9Y397 364 aa5.98□□□□□ -1.45
CD44-217ENST00000525348 PRAMEF22A3QJZ6 481 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 B4E1Z4 1266 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 CBX4O00257 560 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 APPP05067 770 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 ZNF888P0CJ79 500 aaPredicted RBP5.97□□□□□ -1.45
CD44-217ENST00000525348 TOP3AQ13472 1001 aaPredicted RBP5.97□□□□□ -1.45
CD44-217ENST00000525348 STILQ15468 1287 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 TCEA2Q15560 299 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 KANK2Q63ZY3 851 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 C16orf86Q6ZW13 317 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 LIMS2Q7Z4I7 341 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 RTN4RL1Q86UN2 441 aaPredicted RBP5.97□□□□□ -1.45
CD44-217ENST00000525348 APPBP2Q92624 585 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 FOXRED1Q96CU9 486 aaPredicted RBP5.97□□□□□ -1.45
CD44-217ENST00000525348 BARX1Q9HBU1 254 aaPredicted RBP5.97□□□□□ -1.45
CD44-217ENST00000525348 PPP4R1LQ9P1A2 415 aa5.97□□□□□ -1.45
CD44-217ENST00000525348 PTPDC1A2A3K4 754 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 B4GALT4O60513 344 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 POLD1P28340 1107 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 ADCY8P40145 1251 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 ECE1P42892 770 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 EFEMP1Q12805 493 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 CC2D1AQ6P1N0 951 aaPredicted RBP5.96□□□□□ -1.46
CD44-217ENST00000525348 SYNPOQ8N3V7 929 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 WNK4Q96J92 1243 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 BTBD2Q9BX70 525 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 KRTAP9-3Q9BYQ3 159 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 MTFR1LQ9H019 292 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 USP35Q9P2H5 1018 aa5.96□□□□□ -1.46
CD44-217ENST00000525348 MAGEC2Q9UBF1 373 aaPredicted RBP5.96□□□□□ -1.46
CD44-217ENST00000525348 GOLGA6L22H0YM25 854 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 LAMTOR5O43504 91 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 HIP1RO75146 1068 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 CNOT4O95628 575 aaKnown RBP5.95□□□□□ -1.46
CD44-217ENST00000525348 EPHB4P54760 987 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 CD83Q01151 205 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 ARHGAP44Q17R89 818 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 WDR72Q3MJ13 1102 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 RALYLQ86SE5 291 aaKnown RBP5.95□□□□□ -1.46
CD44-217ENST00000525348 REXO1L1PQ8IX06 675 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 HIPK4Q8NE63 616 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 ERCC4Q92889 916 aaPredicted RBP5.95□□□□□ -1.46
CD44-217ENST00000525348 NINJ1Q92982 152 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 MEGF9Q9H1U4 602 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 INTS7Q9NVH2 962 aaKnown RBP5.95□□□□□ -1.46
CD44-217ENST00000525348 B4GALT6Q9UBX8 382 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 TBX22Q9Y458 520 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 ASB1Q9Y576 335 aa5.95□□□□□ -1.46
CD44-217ENST00000525348 K7ESM1 405 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 CDC45O75419 566 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 KIF11P52732 1056 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 PPP2CBP62714 309 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 PPP2CAP67775 309 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 NFKB2Q00653 900 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 CFAP100Q494V2 611 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 DALRD3Q5D0E6 543 aaKnown RBP5.94□□□□□ -1.46
CD44-217ENST00000525348 DPP8Q6V1X1 898 aaPredicted RBP5.94□□□□□ -1.46
CD44-217ENST00000525348 LARP4Q71RC2 724 aaKnown RBP eCLIP5.94□□□□□ -1.46
CD44-217ENST00000525348 PLEKHH3Q7Z736 793 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 KIAA0907Q7Z7F0 614 aaPredicted RBP5.94□□□□□ -1.46
CD44-217ENST00000525348 DHX37Q8IY37 1157 aaKnown RBP5.94□□□□□ -1.46
CD44-217ENST00000525348 ZDHHC5Q9C0B5 715 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 OR10A5Q9H207 317 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 H2AFY2Q9P0M6 372 aaPredicted RBP5.94□□□□□ -1.46
CD44-217ENST00000525348 ZNF536O15090 1300 aa5.94□□□□□ -1.46
CD44-217ENST00000525348 ZNF891A8MT65 544 aaPredicted RBP5.93□□□□□ -1.46
CD44-217ENST00000525348 GPR42O15529 346 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms