RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 COA3Q9Y2R0 106 aaPredicted RBP9.34□□□□□ -0.91
SDCBP-208ENST00000520228 SHPRHQ149N8 1683 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 HRKO00198 91 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 CLSTN1O94985 981 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 MCTP1Q6DN14 999 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 DHX37Q8IY37 1157 aaKnown RBP9.33□□□□□ -0.92
SDCBP-208ENST00000520228 MFSD3Q96ES6 412 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 SLC12A5Q9H2X9 1139 aa9.33□□□□□ -0.92
SDCBP-208ENST00000520228 TNPO3Q9Y5L0 923 aaKnown RBP9.33□□□□□ -0.92
SDCBP-208ENST00000520228 ZC3H12DA2A288 527 aaKnown RBP9.32□□□□□ -0.92
SDCBP-208ENST00000520228 IRS4O14654 1257 aaPredicted RBP9.32□□□□□ -0.92
SDCBP-208ENST00000520228 IGFALSP35858 605 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 PDE6BP35913 854 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 MAPKAPK2P49137 400 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 ZNF460Q14592 562 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 RAB3GAP1Q15042 981 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 EMC4Q5J8M3 183 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 ZNF662Q6ZS27 426 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 C16orf59Q7L2K0 433 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 OTOP3Q7RTS5 596 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 ZC3H7AQ8IWR0 971 aaKnown RBP9.32□□□□□ -0.92
SDCBP-208ENST00000520228 BRD4O60885 1362 aaPredicted RBP9.32□□□□□ -0.92
SDCBP-208ENST00000520228 QRICH2Q9H0J4 1663 aa9.32□□□□□ -0.92
SDCBP-208ENST00000520228 A0A087X0B3 334 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 NUDT19A8MXV4 375 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 SGSM2O43147 1006 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 TADA3O75528 432 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 DGKIO75912 1065 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 POU3F2P20265 443 aaPredicted RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 MPZL3Q6UWV2 235 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 PRR23BQ6ZRT6 265 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 HDGFL2Q7Z4V5 671 aaPredicted RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 LRRTM3Q86VH5 581 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 DCP2Q8IU60 420 aaKnown RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 FAM177A1Q8N128 213 aaPredicted RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 SEC14L1Q92503 715 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 FBXW5Q969U6 566 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 KCNJ15Q99712 375 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 CELF4Q9BZC1 486 aaKnown RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 SLKQ9H2G2 1235 aaPredicted RBP9.31□□□□□ -0.92
SDCBP-208ENST00000520228 RXFP1Q9HBX9 757 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 SLC6A20Q9NP91 592 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 TERF2IPQ9NYB0 399 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 FAM53CQ9NYF3 392 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 SIT1Q9Y3P8 196 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 USP6P35125 1406 aa9.31□□□□□ -0.92
SDCBP-208ENST00000520228 KTN1Q86UP2 1357 aaKnown RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 F8W031 263 aaPredicted RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 ABLIM1O14639 778 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 NPTXRO95502 500 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 SRGAP2CP0DJJ0 459 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 HSPA5P11021 654 aaKnown RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 PLEKHN1Q494U1 663 aaPredicted RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 ZCCHC8Q6NZY4 707 aaKnown RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 DDX1Q92499 740 aaKnown RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 TSPAN17Q96FV3 270 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 PEX11GQ96HA9 241 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 TRPC5Q9UL62 973 aaPredicted RBP9.3□□□□□ -0.92
SDCBP-208ENST00000520228 CBLCQ9ULV8 474 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 HCFC2Q9Y5Z7 792 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 TTC21BQ7Z4L5 1316 aa9.3□□□□□ -0.92
SDCBP-208ENST00000520228 OPA1O60313 960 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 GCP02774 474 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 PYGMP11217 842 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 UNC5CLQ8IV45 518 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 PIP4K2CQ8TBX8 421 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 PRDM11Q9NQV5 511 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 NUDT5Q9UKK9 219 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 ZNF652Q9Y2D9 606 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 COQ6Q9Y2Z9 468 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 COL22A1Q8NFW1 1626 aaPredicted RBP9.29□□□□□ -0.92
SDCBP-208ENST00000520228 CPSF1Q10570 1443 aaKnown RBP9.29□□□□□ -0.92
SDCBP-208ENST00000520228 TTC21AQ8NDW8 1320 aa9.29□□□□□ -0.92
SDCBP-208ENST00000520228 NINLQ9Y2I6 1382 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 TCRBV5S4A2TA0A5A2 114 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 CCDC66A2RUB6 948 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 B4E1Z4 1266 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 NKRFO15226 690 aaKnown RBP eCLIP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 COL6A2P12110 1019 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 CANXP27824 592 aaKnown RBP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 MASP1P48740 699 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 RBM6P78332 1123 aaKnown RBP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 LACTBP83111 547 aaPredicted RBP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 PRR5P85299 388 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 SPIRE1Q08AE8 756 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 TMEM62Q0P6H9 643 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 CHRNA2Q15822 529 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 TAF7LQ5H9L4 462 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 STEAP3Q658P3 488 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 CYP4F22Q6NT55 531 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 UHMK1Q8TAS1 419 aaKnown RBP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 SH3RF2Q8TEC5 729 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 TARS2Q9BW92 718 aaKnown RBP9.28□□□□□ -0.92
SDCBP-208ENST00000520228 SSH2Q76I76 1423 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 USP19O94966 1318 aa9.28□□□□□ -0.92
SDCBP-208ENST00000520228 RGPD8O14715 1765 aaPredicted RBP9.27□□□□□ -0.92
SDCBP-208ENST00000520228 MYOCOSA0A1B0GUC4 107 aa9.27□□□□□ -0.93
SDCBP-208ENST00000520228 GSG1L2A8MUP6 293 aa9.27□□□□□ -0.93
SDCBP-208ENST00000520228 HGSO14964 777 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms