RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 IFIH1Q9BYX4 1025 aaKnown RBP33.63■■■□□ 2.97
SYNPO-203ENST00000518872 PCDHA10Q9Y5I2 948 aa33.63■■■□□ 2.97
SYNPO-203ENST00000518872 SQORQ9Y6N5 450 aa33.63■■■□□ 2.97
SYNPO-203ENST00000518872 EVPLQ92817 2033 aa33.63■■■□□ 2.97
SYNPO-203ENST00000518872 CUL9Q8IWT3 2517 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 SMIM35A0A1B0GVV1 85 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 MSH4O15457 936 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 ARHGEF15O94989 841 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 CTDNEP1O95476 244 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 SEC24BO95487 1268 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 XBP1P17861 261 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 POU3F3P20264 500 aaPredicted RBP33.62■■■□□ 2.97
SYNPO-203ENST00000518872 MRPS6P82932 125 aaKnown RBP33.62■■■□□ 2.97
SYNPO-203ENST00000518872 SWSAP1Q6NVH7 229 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 PDXDC2PQ6P474 469 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 TMCO2Q7Z6W1 182 aaPredicted RBP33.62■■■□□ 2.97
SYNPO-203ENST00000518872 SLC5A5Q92911 643 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 MBOAT7Q96N66 472 aa33.62■■■□□ 2.97
SYNPO-203ENST00000518872 PSAPP07602 524 aa33.61■■■□□ 2.97
SYNPO-203ENST00000518872 KRT25Q7Z3Z0 450 aa33.61■■■□□ 2.97
SYNPO-203ENST00000518872 CDY2AQ9Y6F7 541 aa33.61■■■□□ 2.97
SYNPO-203ENST00000518872 ATP4AP20648 1035 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 HTRA4P83105 476 aaPredicted RBP33.6■■■□□ 2.97
SYNPO-203ENST00000518872 LPIN1Q14693 890 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 ZNF484Q5JVG2 852 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 FBXO47Q5MNV8 452 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 IER5Q5VY09 327 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 MTHFD1LQ6UB35 978 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 NME8Q8N427 588 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 TRAPPC12Q8WVT3 735 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 BBXQ8WY36 941 aaPredicted RBP33.6■■■□□ 2.97
SYNPO-203ENST00000518872 COL4A6Q14031 1691 aa33.6■■■□□ 2.97
SYNPO-203ENST00000518872 PRRC2BQ5JSZ5 2229 aaKnown RBP33.6■■■□□ 2.97
SYNPO-203ENST00000518872 IGSF9BQ9UPX0 1349 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 KDM3AQ9Y4C1 1321 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 LOC101059915A0A1B0GWI6 518 aaPredicted RBP33.59■■■□□ 2.97
SYNPO-203ENST00000518872 LCHNA4D1U4 455 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 WDR64B1ANS9 1081 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 GHRP10912 638 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 NONOQ15233 471 aaKnown RBP eCLIP33.59■■■□□ 2.97
SYNPO-203ENST00000518872 ME3Q16798 604 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 MYOCDQ8IZQ8 938 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 USP38Q8NB14 1042 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 WASF1Q92558 559 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 GTF3C6Q969F1 213 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 TOP1MTQ969P6 601 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 UIMC1Q96RL1 719 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 INSL6Q9Y581 213 aa33.59■■■□□ 2.97
SYNPO-203ENST00000518872 TTC3P53804 2025 aa33.58■■■□□ 2.97
SYNPO-203ENST00000518872 NEK4P51957 841 aa33.58■■■□□ 2.97
SYNPO-203ENST00000518872 TSHZ1Q6ZSZ6 1077 aa33.58■■■□□ 2.97
SYNPO-203ENST00000518872 ZBTB10Q96DT7 871 aa33.58■■■□□ 2.97
SYNPO-203ENST00000518872 FAM49AQ9H0Q0 323 aaPredicted RBP33.58■■■□□ 2.97
SYNPO-203ENST00000518872 ORC3Q9UBD5 711 aaPredicted RBP33.58■■■□□ 2.97
SYNPO-203ENST00000518872 KCNJ14Q9UNX9 436 aa33.58■■■□□ 2.97
SYNPO-203ENST00000518872 ZBTB42B2RXF5 422 aa33.57■■■□□ 2.96
SYNPO-203ENST00000518872 SFNP31947 248 aa33.57■■■□□ 2.96
SYNPO-203ENST00000518872 SP7Q8TDD2 431 aaPredicted RBP33.57■■■□□ 2.96
SYNPO-203ENST00000518872 TRPV2Q9Y5S1 764 aa33.57■■■□□ 2.96
SYNPO-203ENST00000518872 GAS7O60861 476 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 PSMD10O75832 226 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 KLRC1P26715 233 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 LRCH2Q5VUJ6 765 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 FAM43BQ6ZT52 329 aaPredicted RBP33.56■■■□□ 2.96
SYNPO-203ENST00000518872 RDM1Q8NG50 284 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 FAM167AQ96KS9 214 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 TEKT3Q9BXF9 490 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 DISC1Q9NRI5 854 aa33.56■■■□□ 2.96
SYNPO-203ENST00000518872 RBAK-RBAKDNI3L0D1 243 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 M0QZ92 97 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 LARGE1O95461 756 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 TDP2O95551 362 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 FDPSP14324 419 aaKnown RBP33.55■■■□□ 2.96
SYNPO-203ENST00000518872 IGFBP4P22692 258 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 JAK3P52333 1124 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 B3GNT9Q6UX72 402 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 GABBR1Q9UBS5 961 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 CEP131Q9UPN4 1083 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 SAMM50Q9Y512 469 aa33.55■■■□□ 2.96
SYNPO-203ENST00000518872 EPOPA6NHQ4 379 aa33.54■■■□□ 2.96
SYNPO-203ENST00000518872 ERVK-21P61565 698 aa33.54■■■□□ 2.96
SYNPO-203ENST00000518872 ETNPPLQ8TBG4 499 aa33.54■■■□□ 2.96
SYNPO-203ENST00000518872 ARNTL2Q8WYA1 636 aa33.54■■■□□ 2.96
SYNPO-203ENST00000518872 CELF4Q9BZC1 486 aaKnown RBP33.54■■■□□ 2.96
SYNPO-203ENST00000518872 COL4A4P53420 1690 aaPredicted RBP33.54■■■□□ 2.96
SYNPO-203ENST00000518872 CCDC194A0A1B0GVG4 234 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 LINC01553A4QN01 128 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 INF2Q27J81 1249 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 CKAP2LQ8IYA6 745 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 NECAB1Q8N987 351 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 TGS1Q96RS0 853 aaKnown RBP33.53■■■□□ 2.96
SYNPO-203ENST00000518872 AGO3Q9H9G7 860 aaKnown RBP33.53■■■□□ 2.96
SYNPO-203ENST00000518872 CERS4Q9HA82 394 aa33.53■■■□□ 2.96
SYNPO-203ENST00000518872 C22orf31O95567 290 aa33.52■■■□□ 2.96
SYNPO-203ENST00000518872 PPP4R3AQ6IN85 833 aa33.52■■■□□ 2.96
SYNPO-203ENST00000518872 FAM117BQ6P1L5 589 aa33.52■■■□□ 2.96
SYNPO-203ENST00000518872 KIAA0319LQ8IZA0 1049 aa33.52■■■□□ 2.96
SYNPO-203ENST00000518872 NSUN7Q8NE18 718 aaKnown RBP33.52■■■□□ 2.96
SYNPO-203ENST00000518872 UNC45AQ9H3U1 944 aa33.52■■■□□ 2.96
SYNPO-203ENST00000518872 GCFC2P16383 781 aaKnown RBP33.51■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms