RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RESTQ13127 1097 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 HIC1Q14526 733 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 PDIA5Q14554 519 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 XKR3Q5GH77 459 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 TAF2Q6P1X5 1199 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 TMEM199Q8N511 208 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 SPRYD3Q8NCJ5 442 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 CTAGE1Q96RT6 745 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 ZSWIM4Q9H7M6 989 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 ZNF862O60290 1169 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 PARNO95453 639 aaKnown RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 OATP04181 439 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 BMP8BP34820 402 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 MAGEA10P43363 369 aaPredicted RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 ATP2C1P98194 919 aaPredicted RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 PRKCEQ02156 737 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 ARL6IP4Q66PJ3 421 aaKnown RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 DTHD1Q6ZMT9 781 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 RPAINQ86UA6 219 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 ERMNQ8TAM6 284 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 BADQ92934 168 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 HSD17B14Q9BPX1 270 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 EIF2AK1Q9BQI3 630 aaKnown RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 NIFKQ9BYG3 293 aaKnown RBP16.01■□□□□ 0.15
NUP54-216ENST00000514901 PPP1R12CQ9BZL4 782 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 TUBE1Q9UJT0 475 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 PCDHA2Q9Y5H9 948 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 WDR81Q562E7 1941 aa16.01■□□□□ 0.15
NUP54-216ENST00000514901 MAGEB2O15479 319 aa16■□□□□ 0.15
NUP54-216ENST00000514901 ITGB8P26012 769 aa16■□□□□ 0.15
NUP54-216ENST00000514901 CYP2C18P33260 490 aa16■□□□□ 0.15
NUP54-216ENST00000514901 RFC2P35250 354 aa16■□□□□ 0.15
NUP54-216ENST00000514901 IGBP1P78318 339 aa16■□□□□ 0.15
NUP54-216ENST00000514901 MDM2Q00987 491 aaPredicted RBP16■□□□□ 0.15
NUP54-216ENST00000514901 FPGSQ05932 587 aa16■□□□□ 0.15
NUP54-216ENST00000514901 PPIGQ13427 754 aaKnown RBP eCLIP16■□□□□ 0.15
NUP54-216ENST00000514901 UGCGQ16739 394 aa16■□□□□ 0.15
NUP54-216ENST00000514901 MARCH8Q5T0T0 291 aa16■□□□□ 0.15
NUP54-216ENST00000514901 OTUD6AQ7L8S5 288 aa16■□□□□ 0.15
NUP54-216ENST00000514901 RSPH3Q86UC2 560 aa16■□□□□ 0.15
NUP54-216ENST00000514901 C4orf19Q8IY42 314 aa16■□□□□ 0.15
NUP54-216ENST00000514901 BANK1Q8NDB2 785 aa16■□□□□ 0.15
NUP54-216ENST00000514901 GDF15Q99988 308 aa16■□□□□ 0.15
NUP54-216ENST00000514901 PPME1Q9Y570 386 aa16■□□□□ 0.15
NUP54-216ENST00000514901 DDX11L8A8MPP1 907 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 SLITRK3O94933 977 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 LYPLA2O95372 231 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 ZSCAN22P10073 491 aaPredicted RBP15.99■□□□□ 0.15
NUP54-216ENST00000514901 CKBP12277 381 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 SELPP16109 830 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 KLRC1P26715 233 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 TRIM71Q2Q1W2 868 aaKnown RBP15.99■□□□□ 0.15
NUP54-216ENST00000514901 MTHFD1LQ6UB35 978 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 TPH2Q8IWU9 490 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 EXOC8Q8IYI6 725 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 RPUSD2Q8IZ73 545 aaKnown RBP15.99■□□□□ 0.15
NUP54-216ENST00000514901 NME8Q8N427 588 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 DHX38Q92620 1227 aaKnown RBP15.99■□□□□ 0.15
NUP54-216ENST00000514901 DYDC2Q96IM9 177 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 LXNQ9BS40 222 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 POLR3CQ9BUI4 534 aaPredicted RBP15.99■□□□□ 0.15
NUP54-216ENST00000514901 TUFT1Q9NNX1 390 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 RGL1Q9NZL6 768 aa15.99■□□□□ 0.15
NUP54-216ENST00000514901 SMIM35A0A1B0GVV1 85 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 POTEMA6NI47 508 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 ZBTB42B2RXF5 422 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 STBD1O95210 358 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 IQCF3P0C7M6 154 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 XRCC6P12956 609 aaKnown RBP eCLIP15.98■□□□□ 0.15
NUP54-216ENST00000514901 MUTP22033 750 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 THPOP40225 353 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 SF3A1Q15459 793 aaKnown RBP15.98■□□□□ 0.15
NUP54-216ENST00000514901 HAUS3Q68CZ6 603 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 TRMT1LQ7Z2T5 733 aaKnown RBP15.98■□□□□ 0.15
NUP54-216ENST00000514901 IGSF22Q8N9C0 903 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 ZNF396Q96N95 335 aaPredicted RBP15.98■□□□□ 0.15
NUP54-216ENST00000514901 UBE2OQ9C0C9 1292 aaKnown RBP15.98■□□□□ 0.15
NUP54-216ENST00000514901 LRWD1Q9UFC0 647 aa15.98■□□□□ 0.15
NUP54-216ENST00000514901 SEPT9Q9UHD8 586 aaPredicted RBP15.98■□□□□ 0.15
NUP54-216ENST00000514901 F13A1P00488 732 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 PFKMP08237 780 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 RPA1P27694 616 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 TMOD1P28289 359 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 YWHABP31946 246 aaKnown RBP15.97■□□□□ 0.15
NUP54-216ENST00000514901 CCL23P55773 120 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 CYP4A11Q02928 519 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 CTTNQ14247 550 aaKnown RBP15.97■□□□□ 0.15
NUP54-216ENST00000514901 TARBP2Q15633 366 aaKnown RBP15.97■□□□□ 0.15
NUP54-216ENST00000514901 IER5Q5VY09 327 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 LRRC8DQ7L1W4 858 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 ZNF710Q8N1W2 664 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 TRAPPC12Q8WVT3 735 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 JPH2Q9BR39 696 aaPredicted RBP15.97■□□□□ 0.15
NUP54-216ENST00000514901 WNT8AQ9H1J5 351 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 ANKEF1Q9NU02 776 aa15.97■□□□□ 0.15
NUP54-216ENST00000514901 MORC2Q9Y6X9 1032 aaPredicted RBP15.97■□□□□ 0.15
NUP54-216ENST00000514901 UMODL1Q5DID0 1318 aa15.96■□□□□ 0.15
NUP54-216ENST00000514901 RSPH10B2B2RC85 870 aa15.96■□□□□ 0.15
NUP54-216ENST00000514901 RSPH10BP0C881 870 aa15.96■□□□□ 0.15
NUP54-216ENST00000514901 CSF2RAP15509 400 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms