RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TLR3O15455 904 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 SLC37A4O43826 429 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 IPO7O95373 1038 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 LGALS2P05162 132 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 MMP3P08254 477 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 PPFIA1Q13136 1202 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 MFSD10Q14728 455 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 GTF3C6Q969F1 213 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 NLRP4Q96MN2 994 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 OSBPL7Q9BZF2 842 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 CXXC1Q9P0U4 656 aaPredicted RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 SLC9A2Q9UBY0 812 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 MRFAP1Q9Y605 127 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 WNT7AO00755 349 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 SRGAP2CP0DJJ0 459 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 HARSP12081 509 aaKnown RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 KRT2P35908 639 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 TERF1P54274 439 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 CACNB1Q02641 598 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 SLC20A2Q08357 652 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 NTRK3Q16288 839 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 TTC31Q49AM3 519 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 MIER3Q7Z3K6 550 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 DNERQ8NFT8 737 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 MTG1Q9BT17 334 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 DONSONQ9NYP3 566 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 SYNGAP1Q96PV0 1343 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 WDR87Q6ZQQ6 2873 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 PRPF3O43395 683 aaKnown RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 FDPSP14324 419 aaKnown RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 PBX2P40425 430 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 PSEN2P49810 448 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 STAT5BP51692 787 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 ACTR2P61160 394 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 SPRED2Q7Z698 418 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 KSR1Q8IVT5 923 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 GBP3Q9H0R5 595 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 RIC8AQ9NPQ8 531 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 PP2D1A8MPX8 630 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 TMCO5BA8MYB1 307 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 FIBPO43427 364 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 MNX1P50219 401 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 PURAQ00577 322 aaKnown RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 ARHGAP1Q07960 439 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 FAAP100Q0VG06 881 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 TRAF1Q13077 416 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 PLCB4Q15147 1175 aa8.8□□□□□ -1
LIMCH1-219ENST00000514096 DNAJC14Q6Y2X3 702 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 C17orf53Q8N3J3 647 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 SRRTQ9BXP5 876 aaKnown RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 RNF26Q9BY78 433 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 ALDH8A1Q9H2A2 487 aaPredicted RBP8.8□□□□□ -1
LIMCH1-219ENST00000514096 ARVCFO00192 962 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 INSRRP14616 1297 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 TBC1D8BQ0IIM8 1120 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 ITGB3BPQ13352 177 aaPredicted RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 NEDD9Q14511 834 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 RABEP1Q15276 862 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 ZNF274Q96GC6 653 aaPredicted RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 MRFAP1L1Q96HT8 127 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.79□□□□□ -1
LIMCH1-219ENST00000514096 GDPD2Q9HCC8 539 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 OGFRQ9NZT2 677 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 GOLGA6CA6NDK9 693 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 GOLGA6BA6NDN3 693 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 PFKFB2O60825 505 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 GOLGA6DP0CG33 693 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 SP100P23497 879 aaPredicted RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 GUCY2CP25092 1073 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 FUT2Q10981 343 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 LAMC2Q13753 1193 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 CELF3Q5SZQ8 465 aaKnown RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 PRPF38BQ5VTL8 546 aaKnown RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 AP1ARQ63HQ0 302 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 NAIF1Q69YI7 327 aaPredicted RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 TET1Q8NFU7 2136 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 STAMQ92783 540 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 WNT8BQ93098 351 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 MXRA8Q9BRK3 442 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 PDLIM7Q9NR12 457 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 GOLGA6AQ9NYA3 693 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 PCDHA4Q9UN74 947 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 GNEQ9Y223 722 aaKnown RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 GRIN2DO15399 1336 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 CASQ1P31415 396 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 HSD17B4P51659 736 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 MAMDC4Q6UXC1 1216 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 CCDC60Q8IWA6 550 aaPredicted RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 SEPT1Q8WYJ6 367 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 INPP5FQ9Y2H2 1132 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 DIS3Q9Y2L1 958 aaKnown RBP8.79□□□□□ -1
LIMCH1-219ENST00000514096 MUC3AQ02505 3323 aa8.79□□□□□ -1
LIMCH1-219ENST00000514096 TRIP12Q14669 1992 aaPredicted RBP8.78□□□□□ -1
LIMCH1-219ENST00000514096 SOX1O00570 391 aaPredicted RBP8.78□□□□□ -1
LIMCH1-219ENST00000514096 GAS2L3Q86XJ1 694 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 NEK11Q8NG66 645 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 OSMRQ99650 979 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 DISC1Q9NRI5 854 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 ZNF215Q9UL58 517 aaPredicted RBP8.78□□□□□ -1
LIMCH1-219ENST00000514096 POTEB3A0JP26 581 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms