RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 POC1B-GALNT4F8VUJ3 575 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 FGGP02679 453 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 MAN1A1P33908 653 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 KSR1Q8IVT5 923 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 TPH2Q8IWU9 490 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 SLC16A10Q8TF71 515 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 LARP4BQ92615 738 aaKnown RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 DTNBP1Q96EV8 351 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 AGTPBP1Q9UPW5 1226 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 KIAA1210Q9ULL0 1709 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 ECEL1O95672 775 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 HOXA7P31268 230 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 PSMC4P43686 418 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 BYSLQ13895 437 aaKnown RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 FBXO2Q9UK22 296 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 MRPL11Q9Y3B7 192 aaKnown RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 FAM170AA1A519 330 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 PMS2P54278 862 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 LRRC63Q05C16 580 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 GFPT1Q06210 699 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-211ENST00000513346 CUL3Q13618 768 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 AGBL2Q5U5Z8 902 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 KRT26Q7Z3Y9 468 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 NUF2Q9BZD4 464 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 SNX24Q9Y343 169 aa12.15□□□□□ -0.46
TCOF1-211ENST00000513346 PODXLO00592 558 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 CTDNEP1O95476 244 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 ELOA2Q8IYF1 753 aaPredicted RBP12.15□□□□□ -0.47
TCOF1-211ENST00000513346 NUDCD1Q96RS6 583 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 CSRNP1Q96S65 589 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 ISCA1Q9BUE6 129 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 DDX47Q9H0S4 455 aaKnown RBP12.15□□□□□ -0.47
TCOF1-211ENST00000513346 TBK1Q9UHD2 729 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 PCDHA12Q9UN75 941 aa12.15□□□□□ -0.47
TCOF1-211ENST00000513346 TESPA1A2RU30 521 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 TMED1Q13445 227 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 TRPC3Q13507 836 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 KIF22Q14807 665 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PRR16Q569H4 304 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 MSL3Q8N5Y2 521 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 XPO6Q96QU8 1125 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 STRBPQ96SI9 672 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PCDHA4Q9UN74 947 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 TAF6LQ9Y6J9 622 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 MROH7-TTC4A0A0A0MT08 1334 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 CYP19A1P11511 503 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SERPINB6P35237 376 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 KLC1Q07866 573 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 GRAPQ13588 217 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 MESDQ14696 234 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PALM2Q8IXS6 379 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 GRAPLQ8TC17 118 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 GLG1Q92896 1179 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 ARL8AQ96BM9 186 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SLITRK6Q9H5Y7 841 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 DIS3Q9Y2L1 958 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SPATA31A5Q5VU36 1347 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SPATA31A7Q8IWB4 1347 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 ESRRAP11474 423 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 CDC27P30260 824 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 CARSP49589 748 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PSMD2Q13200 908 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 LRRC41Q15345 812 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 TMED2Q15363 201 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SUPT20HL1Q3ZLR7 823 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 MIER3Q7Z3K6 550 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 KIF9Q9HAQ2 790 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 USTQ9Y2C2 406 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 PCDHA1Q9Y5I3 950 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SALL3Q9BXA9 1300 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 POLR2MP0CAP2 368 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 FDPSP14324 419 aaKnown RBP12.14□□□□□ -0.47
TCOF1-211ENST00000513346 TMOD1P28289 359 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 AARSP49588 968 aaKnown RBP eCLIP12.14□□□□□ -0.472e-6■■■□□ 15.7
TCOF1-211ENST00000513346 CAPN12Q6ZSI9 719 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 NME8Q8N427 588 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.14□□□□□ -0.477e-7■□□□□ 9.5
TCOF1-211ENST00000513346 CEP72Q9P209 647 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 STK17AQ9UEE5 414 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 SERPINB13Q9UIV8 391 aa12.14□□□□□ -0.47
TCOF1-211ENST00000513346 UBN2Q6ZU65 1347 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 FRMPD1Q5SYB0 1578 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 PLCG1P19174 1290 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 TRPM8Q7Z2W7 1104 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 LRRC37BQ96QE4 947 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 ATP6V0A4Q9HBG4 840 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 RBM12Q9NTZ6 932 aaKnown RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 BSDC1Q9NW68 430 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 GRIN3BO60391 1043 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 AFPP02771 609 aaKnown RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 NR2F2P24468 414 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 MRPS35P82673 323 aaKnown RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 MARCH10Q8NA82 808 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-211ENST00000513346 SLC5A4Q9NY91 659 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 ANAPC5Q9UJX4 755 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 IFNB1P01574 187 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 FOXO4P98177 505 aa12.13□□□□□ -0.47
TCOF1-211ENST00000513346 GPATCH4Q5T3I0 446 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms