RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PAPOLBQ9NRJ5 636 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 MCM8Q9UJA3 840 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 QRICH2Q9H0J4 1663 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 GMNCA6NCL1 334 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 GTPBP6O43824 516 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ATF2P15336 505 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 NPR1P16066 1061 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PDIA3P30101 505 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 USP14P54578 494 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PTGDRQ13258 359 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 NFRKBQ6P4R8 1299 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 GPBP1Q86WP2 473 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 CHURC1Q8WUH1 139 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 MAML3Q96JK9 1138 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PITPNM3Q9BZ71 974 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PTCH1Q13635 1447 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 RNF103-CHMP3A0A140T963 221 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 SMCO2A6NFE2 343 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 INHBAP08476 426 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 HSPD1P10809 573 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 TNNI1P19237 187 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ITGB3BPQ13352 177 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 USH1GQ495M9 461 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 TPH2Q8IWU9 490 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ZC3H15Q8WU90 426 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 KRT19P08727 400 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 GABPAQ06546 454 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ZYXQ15942 572 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ZC3H12BQ5HYM0 836 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 GRAMD1CQ8IYS0 662 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 FANCBQ8NB91 859 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SSH3Q8TE77 659 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ZFYVE19Q96K21 471 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 TRIM15Q9C019 465 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 RNF14Q9UBS8 474 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SSH2Q76I76 1423 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 PRR23D1E9PI22 279 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 PRR23D2P0DMB1 279 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SCG2P13521 617 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ATP1A3P13637 1013 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC1A4P43007 532 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CTCFP49711 727 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CYP27A1Q02318 531 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CYP4F22Q6NT55 531 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CDH24Q86UP0 819 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 RASSF3Q86WH2 238 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC16A10Q8TF71 515 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CNOT6LQ96LI5 555 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 NR1H4Q96RI1 486 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SNX25Q9H3E2 840 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 PPRC1Q5VV67 1664 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 FAM135BQ49AJ0 1406 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 IKBKBO14920 756 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 MAFGO15525 162 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 FTCDO95954 541 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 TNNC2P02585 160 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ARHGDIAP52565 204 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC39A14Q15043 492 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ANGPT1Q15389 498 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 TMTC4Q5T4D3 741 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 CC2D1AQ6P1N0 951 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 NLRX1Q86UT6 975 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 RAPGEF5Q92565 580 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 HDAC11Q96DB2 347 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 QKIQ96PU8 341 aaKnown RBP eCLIP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 PAGR1Q9BTK6 254 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ATP6V0A4Q9HBG4 840 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 SAMSN1Q9NSI8 373 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ARHGEF37A1IGU5 675 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 E7ENQ6 273 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ZSCAN20P17040 1043 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 S100A5P33763 92 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ADAM9Q13443 819 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 MESDQ14696 234 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 RGS9BPQ6ZS82 235 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 RAB20Q9NX57 234 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 NDUFA13Q9P0J0 144 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 DLGAP2Q9P1A6 1054 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 TBK1Q9UHD2 729 aa9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF335Q9H4Z2 1342 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-218ENST00000513024 MLH3Q9UHC1 1453 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CFBP00751 764 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 FGAP02671 866 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 A1BGP04217 495 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 MYCLP12524 364 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 SAT1P21673 171 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 HOXC9P31274 260 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CASP2P42575 452 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 BLIDQ8IZY5 108 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 NEK9Q8TD19 979 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 SCYL1Q96KG9 808 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 LSG1Q9H089 658 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 NT5C3AQ9H0P0 336 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 ZFYVE1Q9HBF4 777 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 MRGBPQ9NV56 204 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 WASHC5Q12768 1159 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 RARS2Q5T160 578 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 PPM1KQ8N3J5 372 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 SPATA5Q8NB90 893 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CATSPER1Q8NEC5 780 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms