RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 SLC45A4Q5BKX6 768 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 CIAPIN1Q6FI81 312 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 MTHFD1LQ6UB35 978 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 OLFML1Q6UWY5 402 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 ZNF454Q8N9F8 522 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 MAP4K1Q92918 833 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 BICD1Q96G01 975 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 FAM163AQ96GL9 167 aaPredicted RBP10.69□□□□□ -0.7
USP53-207ENST00000510852 IPO9Q96P70 1041 aaKnown RBP10.69□□□□□ -0.7
USP53-207ENST00000510852 ZFYVE28Q9HCC9 887 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 RRAGDQ9NQL2 400 aaPredicted RBP10.69□□□□□ -0.7
USP53-207ENST00000510852 AATFQ9NY61 560 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP53-207ENST00000510852 PHTF1Q9UMS5 762 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 MYO3BQ8WXR4 1341 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 FOXP2O15409 715 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 PYGLP06737 847 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 SKIP12755 728 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 GARTP22102 1010 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 AKAP17AQ02040 695 aaKnown RBP10.69□□□□□ -0.7
USP53-207ENST00000510852 ZBTB17Q13105 803 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 ARHGEF6Q15052 776 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 ASIC2Q16515 512 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 ABRAXAS1Q6UWZ7 409 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 TPH2Q8IWU9 490 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 KIFC2Q96AC6 838 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 CRELD1Q96HD1 420 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 YIPF4Q9BSR8 244 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 DSCC1Q9BVC3 393 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 PAPOLBQ9NRJ5 636 aaKnown RBP10.69□□□□□ -0.7
USP53-207ENST00000510852 RRN3Q9NYV6 651 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 UBAP1Q9NZ09 502 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 GAKO14976 1311 aa10.69□□□□□ -0.7
USP53-207ENST00000510852 MAST2Q6P0Q8 1798 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 FAM221AA4D161 298 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 LGR5O75473 907 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CDKL5O76039 1030 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CNOT4O95628 575 aaKnown RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 TMOD1P28289 359 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 EIF6P56537 245 aaKnown RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 TNIP1Q15025 636 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 TUSC1Q2TAM9 212 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 MCTP2Q6DN12 878 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 RAPH1Q70E73 1250 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CELF2-AS1Q8N7Q2 184 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 NAXEQ8NCW5 288 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 ANKK1Q8NFD2 765 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 FNIP1Q8TF40 1166 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 ZNF606Q8WXB4 792 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 GMCL1Q96IK5 515 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 TRIM7Q9C029 511 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 SPATA7Q9P0W8 599 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 WDR35Q9P2L0 1181 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 ARHGAP28Q9P2N2 729 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CTNNA3Q9UI47 895 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 DAGLAQ9Y4D2 1042 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 RBM8AQ9Y5S9 174 aaKnown RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 A0A087X0B3 334 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 GPR75-ASB3A0A0A6YYF3 556 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 F5H423 210 aaPredicted RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 XPOTO43592 962 aaKnown RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 PRKAB2O43741 272 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 GRIN3BO60391 1043 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 KPNA6O60684 536 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 COBLO75128 1261 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 BAG3O95817 575 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 BTDP43251 543 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CTAG1AP78358 180 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CACNB1Q02641 598 aaPredicted RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 AKNAD1Q5T1N1 836 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 HHIPL2Q6UWX4 724 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 LRRC49Q8IUZ0 686 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 MSANTD4Q8NCY6 345 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 AGBL3Q8NEM8 1001 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP53-207ENST00000510852 BAP1Q92560 729 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 MTMR8Q96EF0 704 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 TBATAQ96M53 351 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 MRIQ9BWK5 157 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 CCDC68Q9H2F9 335 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 ELAC1Q9H777 363 aaKnown RBP10.68□□□□□ -0.7
USP53-207ENST00000510852 SLC4A4Q9Y6R1 1079 aa10.68□□□□□ -0.7
USP53-207ENST00000510852 ZNF646O15015 1829 aaPredicted RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 TBKBP1A7MCY6 615 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 ZBTB39O15060 712 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 HSPA1AP0DMV8 641 aaKnown RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 HSPA1BP0DMV9 641 aaKnown RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 CRKP46108 304 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 TRAF1Q13077 416 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 CCDC122Q5T0U0 273 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 PDE12Q6L8Q7 609 aaKnown RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 HS2ST1Q7LGA3 356 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 FAM174AQ8TBP5 190 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 PPM1MQ96MI6 270 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 ATP6V0A4Q9HBG4 840 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 TBC1D22BQ9NU19 505 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 RNF181Q9P0P0 153 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 STIM2Q9P246 746 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 ZNF541Q9H0D2 1346 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 ESPNB1AK53 854 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 KIF2AO00139 706 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms