RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 LMNB2Q03252 620 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 DYDC2Q96IM9 177 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 TMEM60Q9H2L4 133 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 HERC5Q9UII4 1024 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 DNAJC12Q9UKB3 198 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 IVNS1ABPQ9Y6Y0 642 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 SFI1A8K8P3 1242 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 MAPK4P31152 587 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 STAT3P40763 770 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 MIGA2Q7L4E1 593 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 TTLL6Q8N841 843 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 NYAP2Q9P242 653 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 ANKFY1Q9P2R3 1169 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 TRPC6Q9Y210 931 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 FAM196BA6NMK8 535 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 NNTQ13423 1086 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 HHATQ5VTY9 493 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 SMC6Q96SB8 1091 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 SLC16A3O15427 465 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 STK10O94804 968 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 KRT15P19012 456 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 POLR2BP30876 1174 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 GKAP1Q5VSY0 366 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 SLC7A3Q8WY07 619 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 ZNF341Q9BYN7 854 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 VPS37BQ9H9H4 285 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 L2HGDHQ9H9P8 463 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 TUFT1Q9NNX1 390 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 HDAC6Q9UBN7 1215 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 ATRNO75882 1429 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 LMO7Q8WWI1 1683 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 PDXKO00764 312 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 THAP12O43422 761 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 MYCNP04198 464 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 RFX1P22670 979 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 NCAPHQ15003 741 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 REXO1L1PQ8IX06 675 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 CHP1Q99653 195 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 EIF2AK1Q9BQI3 630 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 PCDHB4Q9Y5E5 795 aa11.67□□□□□ -0.54
LIMCH1-205ENST00000503057 EYA4O95677 639 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PHBP35232 272 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 ATP11AP98196 1134 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PKN1Q16512 942 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 TTBK2Q6IQ55 1244 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 EXOC8Q8IYI6 725 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 RSAD2Q8WXG1 361 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MIS12Q9H081 205 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 TBC1D22BQ9NU19 505 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 BCS1LQ9Y276 419 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 FAM169AQ9Y6X4 670 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PALM3A6NDB9 673 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 SORBS3O60504 671 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 ECEL1O95672 775 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 STX2P32856 288 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 DR1Q01658 176 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 STK4Q13043 487 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 NT5DC1Q5TFE4 455 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 STRIP1Q5VSL9 837 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MRC1P22897 1456 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 RGPD8O14715 1765 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MYMKA6NI61 221 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 HMGB1P1B2RPK0 211 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 TMEM191BP0C7N4 346 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 CCT5P48643 541 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 EIF3BP55884 814 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MTMR1Q13613 665 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 TFDP1Q14186 410 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 LGSNQ5TDP6 509 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PADI6Q6TGC4 694 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 ADAM21Q9UKJ8 722 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 NFU1Q9UMS0 254 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PSMD14O00487 310 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 RXRBP28702 533 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 NFRKBQ6P4R8 1299 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 AFDNP55196 1824 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 SSU72P8A0A1W2PR75 194 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 CIAPIN1Q6FI81 312 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 RNF207Q6ZRF8 634 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MRRFQ96E11 262 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 AP1M1Q9BXS5 423 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 IRX2Q9BZI1 471 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 TRIM6Q9C030 488 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 PTPN22Q9Y2R2 807 aa11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 RRP15Q9Y3B9 282 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-205ENST00000503057 MIF4GDA9UHW6 222 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 DHX9Q08211 1270 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 CDC42EP5Q6NZY7 148 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 PDXDC2PQ6P474 469 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 GPATCH11Q8N954 259 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 BANK1Q8NDB2 785 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 JPH2Q9BR39 696 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 PAGR1Q9BTK6 254 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 EPC1Q9H2F5 836 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 CNOT10Q9H9A5 744 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 MRPL47Q9HD33 250 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 ATF7P17544 494 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 EIF2AK2P19525 551 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms