RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 LUC7L3O95232 432 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 ASNSP08243 561 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 MYO1EQ12965 1108 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 NR1I3Q14994 352 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 CCNI2Q6ZMN8 369 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 TPX2Q9ULW0 747 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 TARSL2A2RTX5 802 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 AFPP02771 609 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 LIN9Q5TKA1 542 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 LRRIQ3A6PVS8 624 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 LGALS16A8MUM7 142 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 VPS52Q8N1B4 723 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 MSANTD4Q8NCY6 345 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 CRAMP1Q96RY5 1269 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 ZBTB7AO95365 584 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 FCER1AP12319 257 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 ELF1P32519 619 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 STAT3P40763 770 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 POLGP54098 1239 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 EN1Q05925 392 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 COL9A3Q14050 684 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 RSRC2Q7L4I2 434 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 SPATA4Q8NEY3 305 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 DCAF4Q8WV16 495 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 CEP63Q96MT8 703 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 PARVGQ9HBI0 331 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 GMNCA6NCL1 334 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 PPP1R37O75864 691 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 PSMC2P35998 433 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 RCSD1Q6JBY9 416 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 ZNF365Q70YC5 407 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 ADAMTS1Q9UHI8 967 aa17.68■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEFA5A3E0 1075 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 WTIPA6NIX2 430 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEIP0CG38 1075 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 LRRC63Q05C16 580 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEGQ6S5H5 508 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEEQ6S8J3 1075 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 EEPD1Q7L9B9 569 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 PARP9Q8IXQ6 854 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 RIOK1Q9BRS2 568 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 ANKFY1Q9P2R3 1169 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 SEPT9Q9UHD8 586 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 AGTPBP1Q9UPW5 1226 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 NCK2O43639 380 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 SLCO1A2P46721 670 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 OSBPL9Q96SU4 736 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 ADD3Q9UEY8 706 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 TRPC6Q9Y210 931 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 ZBTB12Q9Y330 459 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 PSMD2Q13200 908 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 DALRD3Q5D0E6 543 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 FYB2Q5VWT5 728 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 CEP170P1Q96L14 293 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 RAB3IPQ96QF0 476 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 AP1M1Q9BXS5 423 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 PLTPP55058 493 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 LLGL1Q15334 1064 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 GBP5Q96PP8 586 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 ELAC2Q9BQ52 826 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 SPZ1Q9BXG8 430 aa17.67■□□□□ 0.42
CCDC88B-209ENST00000494080 CNTNAP5Q8WYK1 1306 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 GAP43P17677 238 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 KRT15P19012 456 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 TAF11Q15544 211 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 PGRMC1O00264 195 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 AP3B2Q13367 1082 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 NCAPHQ15003 741 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 FERMT1Q9BQL6 677 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 GCNT4Q9P109 453 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 KRT14P02533 472 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 MYL7Q01449 175 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 HHATQ5VTY9 493 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 HVCN1Q96D96 273 aa17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-209ENST00000494080 GFPT2O94808 682 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 RASSF2P50749 326 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 NBPF9Q3BBW0 867 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 SEPT14Q6ZU15 432 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 SAAL1Q96ER3 474 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 CCT8L2Q96SF2 557 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 NOP53Q9NZM5 478 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 UAP1Q16222 522 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 FAM160B2Q86V87 743 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 SFR1Q86XK3 245 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 DCPSQ96C86 337 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 SPDL1Q96EA4 605 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 TMEM60Q9H2L4 133 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 C1orf112Q9NSG2 853 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 VPS41P49754 854 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 GLE1Q53GS7 698 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 BCL9O00512 1426 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 CDC42EP5Q6NZY7 148 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 RAD54LQ92698 747 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 ATP6V1G3Q96LB4 118 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 ANKZF1Q9H8Y5 726 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 PARP2Q9UGN5 583 aa17.65■□□□□ 0.42
CCDC88B-209ENST00000494080 GYPCP04921 128 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 SEC24CP53992 1094 aa17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms