RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SH3GLB2Q9NR46 395 aa11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RWDD2AQ9UIY3 292 aa11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SPDYE2BA6NHP3 402 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ENO4A6NNW6 628 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HGSO14964 777 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SPDYE6P0CI01 402 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RCAN1P53805 252 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 OSTNP61366 133 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 VPS36Q86VN1 386 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 METTL13Q8N6R0 699 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HDAC6Q9UBN7 1215 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 USP20Q9Y2K6 914 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 WNT10BO00744 389 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GCFC2P16383 781 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DNM2P50570 870 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GUCY2FP51841 1108 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MXRA7P84157 204 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ATP11AP98196 1134 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 COASYQ13057 564 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NAA35Q5VZE5 725 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 IFT20Q8IY31 132 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ANKFY1Q9P2R3 1169 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ADAMTS1Q9UHI8 967 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PARP4Q9UKK3 1724 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SMIM23A6NLE4 172 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NOP56O00567 594 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PLSCR1O15162 318 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NEFHP12036 1026 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SLC35G1Q2M3R5 365 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MTERF2Q49AM1 385 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SLFN12Q8IYM2 578 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PRPF38AQ8NAV1 312 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FBF1Q8TES7 1133 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 UBLCP1Q8WVY7 318 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DCPSQ96C86 337 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 AK8Q96MA6 479 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NDST4Q9H3R1 872 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RPAP3Q9H6T3 665 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RIC8AQ9NPQ8 531 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HACL1Q9UJ83 578 aa11.7□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPP1R3GB7ZBB8 358 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NFIBO00712 420 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KIF3CO14782 793 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYCP01106 439 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYZAPP0CAP1 466 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CETN1Q12798 172 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GKAP1Q5VSY0 366 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CYFIP1Q7L576 1253 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FBXL16Q8N461 479 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TEKT3Q9BXF9 490 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 IKZF4Q9H2S9 585 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYO1AQ9UBC5 1043 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CRYBG1Q9Y4K1 1723 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LRRIQ4A6NIV6 560 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 IPO5O00410 1097 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TRIM49P0CI25 452 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TRIM49CP0CI26 452 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 IRAK1P51617 712 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RBM43Q6ZSC3 357 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 STXBP4Q6ZWJ1 553 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RAD54LQ92698 747 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SEPT9Q9UHD8 586 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MEFVO15553 781 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RPL13P26373 211 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SSTR3P32745 418 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PEX3P56589 373 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PAK2Q13177 524 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 BEND6Q5SZJ8 279 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPP4R3AQ6IN85 833 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GSPT2Q8IYD1 628 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CCDC63Q8NA47 563 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ATG4CQ96DT6 458 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SERPINA10Q9UK55 444 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 STK38LQ9Y2H1 464 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MFAP3LO75121 409 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DDNO94850 711 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FKBP3Q00688 224 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SWT1Q5T5J6 900 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RNF207Q6ZRF8 634 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KLHL7Q8IXQ5 586 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPM1KQ8N3J5 372 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MB21D1Q8N884 522 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ACTR5Q9H9F9 607 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RNF146Q9NTX7 359 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HYOU1Q9Y4L1 999 aa11.69□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 BAZ2AQ9UIF9 1905 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYH2Q9UKX2 1941 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LAD1O00515 517 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PLEKP08567 350 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ACTN1P12814 892 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NPEPPSP55786 919 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYO1EQ12965 1108 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TRAF1Q13077 416 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NNTQ13423 1086 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 BAATQ14032 418 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPP1R18Q6NYC8 613 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 U2AF1L4Q8WU68 220 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DCAF4Q8WV16 495 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CEP170P1Q96L14 293 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KIFC3Q9BVG8 833 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms