RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KDM3AQ9Y4C1 1321 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 MYO10Q9HD67 2058 aa16.41■□□□□ 0.22
PRPF40A-211ENST00000493468 GVINP1Q7Z2Y8 2422 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 GSTTP1A0A1W2PQM5 241 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 M0QZ92 97 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 PIK3CDO00329 1044 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 FSCN2O14926 492 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 PAK2Q13177 524 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 UBALD2Q8IYN6 164 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 LRFN2Q9ULH4 789 aa16.4■□□□□ 0.22
PRPF40A-211ENST00000493468 PER2O15055 1255 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 PDGFBP01127 241 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 MARK3P27448 753 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 SARSP49591 514 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 RBM10P98175 930 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 ANKRD54Q6NXT1 300 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 MICAL1Q8TDZ2 1067 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 GLG1Q92896 1179 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 TNPO1Q92973 898 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 LZTS1Q9Y250 596 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 NR2E1Q9Y466 385 aa16.39■□□□□ 0.21
PRPF40A-211ENST00000493468 HIP1O00291 1037 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 ATP9AO75110 1047 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 FGF18O76093 207 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 HOXB8P17481 243 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 GATMP50440 423 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 HDAC1Q13547 482 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 MTMR3Q13615 1198 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 CWC27Q6UX04 472 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 CYB5R4Q7L1T6 521 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 ZBTB33Q86T24 672 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 SMARCC2Q8TAQ2 1214 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 CUL5Q93034 780 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 CELF4Q9BZC1 486 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 FAM49AQ9H0Q0 323 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 TMX1Q9H3N1 280 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 DIAPH3Q9NSV4 1193 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 SORCS3Q9UPU3 1222 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 PCDHA2Q9Y5H9 948 aa16.38■□□□□ 0.21
PRPF40A-211ENST00000493468 MEIS2O14770 477 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 PPFIA3O75145 1194 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 INSRRP14616 1297 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 ERVFC1P60507 584 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 TROAPQ12815 778 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 SYCE2Q6PIF2 218 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 NME8Q8N427 588 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 KREMEN2Q8NCW0 462 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 C1orf112Q9NSG2 853 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 TRPC6Q9Y210 931 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 PCDHB7Q9Y5E2 793 aa16.37■□□□□ 0.21
PRPF40A-211ENST00000493468 ITGB5P18084 799 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 TECP42680 631 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 IGBP1P78318 339 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 PLCB3Q01970 1234 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 SPOUT1Q5T280 376 aaKnown RBP16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 MCTP2Q6DN12 878 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 USP17L6PQ6QN14 398 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 THNSL1Q8IYQ7 743 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 TMEM105Q8N8V8 129 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 COLGALT1Q8NBJ5 622 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 OSBPL3Q9H4L5 887 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 TMEM260Q9NX78 707 aa16.36■□□□□ 0.21
PRPF40A-211ENST00000493468 SMIM35A0A1B0GVV1 85 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 MAFGO15525 162 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 LAG3P18627 525 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 KRT76Q01546 638 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 ZBTB10Q96DT7 871 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 NECTIN4Q96NY8 510 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 PCYT2Q99447 389 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 SPZ1Q9BXG8 430 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 ERVK-5Q9HDB9 667 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 NGRNQ9NPE2 291 aaKnown RBP16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 RGS18Q9NS28 235 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 UBIAD1Q9Y5Z9 338 aa16.35■□□□□ 0.21
PRPF40A-211ENST00000493468 ZNF292O60281 2723 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 ERICH2A1L162 156 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 TBKBP1A7MCY6 615 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 BRD1O95696 1058 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 TMEM62Q0P6H9 643 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 TRDNQ13061 729 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 MTMR1Q13613 665 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 TPRNQ4KMQ1 711 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 ODR4Q5SWX8 454 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 ASTLQ6HA08 431 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 SLC24A5Q71RS6 500 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 MRPS27Q92552 414 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 CASP10Q92851 521 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 NKD2Q969F2 451 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 LNPKQ9C0E8 428 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 AZI2Q9H6S1 392 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 CWH43Q9H720 699 aa16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 JPH1Q9HDC5 661 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 TYW1Q9NV66 732 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 PUF60Q9UHX1 559 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-211ENST00000493468 DENND4AQ7Z401 1863 aa16.33■□□□□ 0.21
PRPF40A-211ENST00000493468 EVPLQ92817 2033 aa16.33■□□□□ 0.21
PRPF40A-211ENST00000493468 C9IYK1 514 aa16.33■□□□□ 0.2
PRPF40A-211ENST00000493468 IFIT3O14879 490 aaKnown RBP16.33■□□□□ 0.2
PRPF40A-211ENST00000493468 MGEA5O60502 916 aa16.33■□□□□ 0.2
PRPF40A-211ENST00000493468 SMARCA1P28370 1054 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms