RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 LETM2Q2VYF4 491 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 FAM26DQ5JW98 314 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 LRCH2Q5VUJ6 765 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 PIK3AP1Q6ZUJ8 805 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 HERC6Q8IVU3 1022 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 CCDC83Q8IWF9 413 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 ATP8B4Q8TF62 1192 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 FAM49AQ9H0Q0 323 aaPredicted RBP27.92■■■□□ 2.06
UPF3A-209ENST00000492270 SAMM50Q9Y512 469 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 PCDHA10Q9Y5I2 948 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 EYSQ5T1H1 3165 aa27.92■■■□□ 2.06
UPF3A-209ENST00000492270 SLC37A4O43826 429 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 GAS7O60861 476 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 PSAPP07602 524 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 MGAT3Q09327 533 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 PLEKHG4Q58EX7 1191 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 MOXD1Q6UVY6 613 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 RPAINQ86UA6 219 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 PHOSPHO2Q8TCD6 241 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 RIT2Q99578 217 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 TEKT3Q9BXF9 490 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 UNC45AQ9H3U1 944 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 GABBR1Q9UBS5 961 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 DDX25Q9UHL0 483 aaKnown RBP27.91■■■□□ 2.06
UPF3A-209ENST00000492270 MAFBQ9Y5Q3 323 aaPredicted RBP27.91■■■□□ 2.06
UPF3A-209ENST00000492270 IGSF9BQ9UPX0 1349 aa27.91■■■□□ 2.06
UPF3A-209ENST00000492270 ABHD14A-ACY1A0A1B0GW23 586 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 WDR64B1ANS9 1081 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 PSMD10O75832 226 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 IKBKEQ14164 716 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 TRMT1LQ7Z2T5 733 aaKnown RBP27.9■■■□□ 2.06
UPF3A-209ENST00000492270 NEK8Q86SG6 692 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 ETNPPLQ8TBG4 499 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 SLC28A3Q9HAS3 691 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 DISC1Q9NRI5 854 aa27.9■■■□□ 2.06
UPF3A-209ENST00000492270 HBP1O60381 514 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 KRT2P35908 639 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 MKRN4PQ13434 485 aaPredicted RBP27.89■■■□□ 2.06
UPF3A-209ENST00000492270 MTHFD1LQ6UB35 978 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 CKAP2LQ8IYA6 745 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 TNPO1Q92973 898 aaKnown RBP27.89■■■□□ 2.06
UPF3A-209ENST00000492270 TNFRSF25Q93038 417 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 PCDHA2Q9Y5H9 948 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 CDY2AQ9Y6F7 541 aa27.89■■■□□ 2.06
UPF3A-209ENST00000492270 ZBTB42B2RXF5 422 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 CA3P07451 260 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 GHRP10912 638 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 TMEM62Q0P6H9 643 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 UGCGQ16739 394 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.88■■■□□ 2.05
UPF3A-209ENST00000492270 RSPH3Q86UC2 560 aa27.88■■■□□ 2.05
UPF3A-209ENST00000492270 COL1A2P08123 1366 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 ARHGEF15O94989 841 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 MMP1P03956 469 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 KLRC1P26715 233 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 MRPS6P82932 125 aaKnown RBP27.87■■■□□ 2.05
UPF3A-209ENST00000492270 PPP2R2DQ66LE6 453 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 KRT40Q6A162 431 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 SEPT8Q92599 483 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 PRDM12Q9H4Q4 367 aa27.87■■■□□ 2.05
UPF3A-209ENST00000492270 ZNF862O60290 1169 aa27.86■■■□□ 2.05
UPF3A-209ENST00000492270 CCNT1O60563 726 aaKnown RBP27.86■■■□□ 2.05
UPF3A-209ENST00000492270 EFCAB14O75071 495 aa27.86■■■□□ 2.05
UPF3A-209ENST00000492270 B3GNT9Q6UX72 402 aa27.86■■■□□ 2.05
UPF3A-209ENST00000492270 BBXQ8WY36 941 aaPredicted RBP27.86■■■□□ 2.05
UPF3A-209ENST00000492270 IFIH1Q9BYX4 1025 aaKnown RBP27.86■■■□□ 2.05
UPF3A-209ENST00000492270 BRMS1Q9HCU9 246 aa27.86■■■□□ 2.05
UPF3A-209ENST00000492270 COL4A4P53420 1690 aaPredicted RBP27.86■■■□□ 2.05
UPF3A-209ENST00000492270 BTBD18B2RXH4 712 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 FOSL2P15408 326 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 JAK3P52333 1124 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 LPIN1Q14693 890 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 ZNF484Q5JVG2 852 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 PPP4R3AQ6IN85 833 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 FAM117BQ6P1L5 589 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 MIER3Q7Z3K6 550 aa27.85■■■□□ 2.05
UPF3A-209ENST00000492270 DIS3L2Q8IYB7 885 aaKnown RBP27.85■■■□□ 2.05
UPF3A-209ENST00000492270 ZSCAN31Q96LW9 406 aaPredicted RBP27.85■■■□□ 2.05
UPF3A-209ENST00000492270 SMIM35A0A1B0GVV1 85 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 LCHNA4D1U4 455 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 TLL1O43897 1013 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 SFNP31947 248 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 GUCY1B3Q02153 619 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 TRIM29Q14134 588 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 RABEP1Q15276 862 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 FBXO47Q5MNV8 452 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 KCNMB3Q9NPA1 279 aa27.84■■■□□ 2.05
UPF3A-209ENST00000492270 GJB5O95377 273 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 C22orf31O95567 290 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 GCFC2P16383 781 aaKnown RBP27.83■■■□□ 2.05
UPF3A-209ENST00000492270 PRKCEQ02156 737 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 SPRED2Q7Z698 418 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 POTEDQ86YR6 584 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 MYOCDQ8IZQ8 938 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 LLPHQ9BRT6 129 aaKnown RBP27.83■■■□□ 2.05
UPF3A-209ENST00000492270 ZBED2Q9BTP6 218 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 SH2B1Q9NRF2 756 aaPredicted RBP27.83■■■□□ 2.05
UPF3A-209ENST00000492270 TRPV2Q9Y5S1 764 aa27.83■■■□□ 2.05
UPF3A-209ENST00000492270 TRANK1O15050 2925 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 LOC101059915A0A1B0GWI6 518 aaPredicted RBP27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms