RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 URI1O94763 535 aaPredicted RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 EGFRP00533 1210 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 KRT18P05783 430 aaKnown RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 FKBP1BP68106 108 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 KCNMA1Q12791 1236 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 PABPC4Q13310 644 aaKnown RBP eCLIP11.85□□□□□ -0.51
USP4-214ENST00000491791 ASTE1Q2TB18 679 aaPredicted RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 ARHGAP29Q52LW3 1261 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 APOBEC3FQ8IUX4 373 aaKnown RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 ACRBPQ8NEB7 543 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 ZIC5Q96T25 663 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 STRA6Q9BX79 667 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 TEKT3Q9BXF9 490 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 FGFBP2Q9BYJ0 223 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 NHEJ1Q9H9Q4 299 aaPredicted RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 METTL14Q9HCE5 456 aaKnown RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 PLCB1Q9NQ66 1216 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 JADE2Q9NQC1 790 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 TYW1Q9NV66 732 aaKnown RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 FAM53CQ9NYF3 392 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 CEP72Q9P209 647 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 DBR1Q9UK59 544 aaKnown RBP11.85□□□□□ -0.51
USP4-214ENST00000491791 FBXL5Q9UKA1 691 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 CCPG1Q9ULG6 757 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 MYO6Q9UM54 1294 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 DAAM1Q9Y4D1 1078 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 ATP8B3O60423 1300 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 MYPNQ86TC9 1320 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 NPHP3-ACAD11A0A0J9YXS1 232 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 CTAGE9A4FU28 777 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 FAM155AB1AL88 458 aaPredicted RBP11.84□□□□□ -0.51
USP4-214ENST00000491791 C19orf81C9J6K1 198 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 IPO5O00410 1097 aaKnown RBP11.84□□□□□ -0.51
USP4-214ENST00000491791 PJA2O43164 708 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 CALUO43852 315 aaPredicted RBP11.84□□□□□ -0.51
USP4-214ENST00000491791 GAS7O60861 476 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 SSBP05455 408 aaKnown RBP eCLIP11.84□□□□□ -0.51
USP4-214ENST00000491791 SLC10A3P09131 477 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 RPL13P26373 211 aaKnown RBP11.84□□□□□ -0.51
USP4-214ENST00000491791 HERVK_113P62684 666 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 AMPD2Q01433 879 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 ADAM9Q13443 819 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 WHAMMP3Q1A5X7 153 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 NOL9Q5SY16 702 aaKnown RBP11.84□□□□□ -0.51
USP4-214ENST00000491791 DPY19L2P1Q6NXN4 242 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 DLK2Q6UY11 383 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 SFR1Q86XK3 245 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 CREBRFQ8IUR6 639 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 SCYL3Q8IZE3 742 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 TXLNBQ8N3L3 684 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 CEP112Q8N8E3 955 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 RDM1Q8NG50 284 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 RABGGTAQ92696 567 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 CDCA5Q96FF9 252 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 FIZ1Q96SL8 496 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 ZNF577Q9BSK1 485 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 MKNK1Q9BUB5 465 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 RUSC1Q9BVN2 902 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 TIPINQ9BVW5 301 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 TSGA10Q9BZW7 698 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 BHMT2Q9H2M3 363 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 AS3MTQ9HBK9 375 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 TBC1D22BQ9NU19 505 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 RLFQ13129 1914 aa11.84□□□□□ -0.51
USP4-214ENST00000491791 ANO9A1A5B4 782 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 GTPBP10A4D1E9 387 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 MAFGO15525 162 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 ATP8B1O43520 1251 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 KRT86O43790 486 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 ZBED4O75132 1171 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 TBCAO75347 108 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 TRPA1O75762 1119 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 NOL4O94818 638 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 SLC34A2O95436 690 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 P4HBP07237 508 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 ARP10275 920 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 TAL1P17542 331 aaPredicted RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 ITGB5P18084 799 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 ANXA13P27216 316 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 KLK7P49862 253 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 VAV2P52735 878 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 BACE1P56817 501 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 SNRPFP62306 86 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 ALCAMQ13740 583 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 TKFCQ3LXA3 575 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 ANGEL2Q5VTE6 544 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 PAPD7Q5XG87 772 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 PDXDC1Q6P996 788 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 SRGAP1Q7Z6B7 1085 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 SLC9A9Q8IVB4 645 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 GPR161Q8N6U8 529 aaKnown RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 REPS2Q8NFH8 660 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 SYTL5Q8TDW5 730 aaPredicted RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 UBXN4Q92575 508 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 BORCS6Q96GS4 357 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 DYDC2Q96IM9 177 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 AGBL1Q96MI9 1066 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 NAPGQ99747 312 aaPredicted RBP11.83□□□□□ -0.52
USP4-214ENST00000491791 SENP7Q9BQF6 1050 aa11.83□□□□□ -0.52
USP4-214ENST00000491791 UNC45AQ9H3U1 944 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms