RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 PCDHA12Q9UN75 941 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 VPS37CA5D8V6 355 aaPredicted RBP18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZNF862O60290 1169 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 CAND2O75155 1236 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 OATP04181 439 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 THPOP40225 353 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TXKP42681 527 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SPIRE1Q08AE8 756 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 NBR1Q14596 966 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZNF484Q5JVG2 852 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZNF618Q5T7W0 954 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TAF2Q6P1X5 1199 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PSRC1Q6PGN9 363 aaPredicted RBP18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RUFY4Q6ZNE9 571 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TRAPPC12Q8WVT3 735 aa18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TTC12Q9H892 705 aaPredicted RBP18.31■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 MYH9P35579 1960 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 WDR81Q562E7 1941 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PARNO95453 639 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PFKMP08237 780 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 OR52Z1P0C646 297 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ACRP10323 421 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TOB1P50616 345 aaPredicted RBP18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 EPHA7Q15375 998 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SHHQ15465 462 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RILPL1Q5EBL4 403 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 C9orf50Q5SZB4 431 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TRMT1LQ7Z2T5 733 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RPUSD2Q8IZ73 545 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 BANK1Q8NDB2 785 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 NRBP2Q9NSY0 501 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 KAT6AQ92794 2004 aa18.3■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 P4HBP07237 508 aaKnown RBP18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 HSP90AA1P07900 732 aaKnown RBP18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PSMC5P62195 406 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TMEM240Q5SV17 173 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TRAF7Q6Q0C0 670 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 MTHFD1LQ6UB35 978 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 C16orf59Q7L2K0 433 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 DEFB128Q7Z7B8 93 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RPAINQ86UA6 219 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RSPH3Q86UC2 560 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZBTB10Q96DT7 871 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.29■□□□□ 0.521e-9■■□□□ 13.8
MSH5-SAPCD1-206ENST00000491552 CEP131Q9UPN4 1083 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PCDHB6Q9Y5E3 794 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PCDHA2Q9Y5H9 948 aa18.29■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RSPH10B2B2RC85 870 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZBTB42B2RXF5 422 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 DKC1O60832 514 aaKnown RBP eCLIP18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RPLP2P05387 115 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 CTSHP09668 335 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RSPH10BP0C881 870 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SYT1P21579 422 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 KLRC1P26715 233 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 QARSP47897 775 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 XKR3Q5GH77 459 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZNF365Q70YC5 407 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 BRAPQ7Z569 592 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 DNAJB3Q8WWF6 145 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 VWCEQ96DN2 955 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RNPC3Q96LT9 517 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SCN5AQ14524 2016 aa18.28■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SMIM35A0A1B0GVV1 85 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 C22orf31O95567 290 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 FGBP02675 491 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 C4orf32Q8N8J7 132 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 NEK9Q8TD19 979 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 DYDC2Q96IM9 177 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 EIF2AK1Q9BQI3 630 aaKnown RBP18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 LXNQ9BS40 222 aa18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 FAM49AQ9H0Q0 323 aaPredicted RBP18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SEPT9Q9UHD8 586 aaPredicted RBP18.27■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 POTEMA6NI47 508 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 LAD1O00515 517 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 NBNO60934 754 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 STBD1O95210 358 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 TECP42680 631 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 CYP4A11Q02928 519 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 PTGDRQ13258 359 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 GPNMBQ14956 572 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 TMEM266Q2M3C6 531 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 FAM26DQ5JW98 314 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 FERMT3Q86UX7 667 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 HERVK_113Q902F9 699 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 NIFKQ9BYG3 293 aaKnown RBP18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 FTOQ9C0B1 505 aaKnown RBP eCLIP18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 MTIF3Q9H2K0 278 aaKnown RBP18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 RGL1Q9NZL6 768 aa18.26■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 DDX11L8A8MPP1 907 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 MAGEB2O15479 319 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 STX6O43752 255 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 CXCL10P02778 98 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 ACTN1P12814 892 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 MGAT3Q09327 533 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 CTTNQ14247 550 aaKnown RBP18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 MBTPS1Q14703 1052 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 LRIT3Q3SXY7 679 aa18.25■□□□□ 0.51
MSH5-SAPCD1-206ENST00000491552 MTERF2Q49AM1 385 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms