RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 SF3B3Q15393 1217 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 NPY5RQ15761 445 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 PFKFB3Q16875 520 aaPredicted RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 HSP90B2PQ58FF3 399 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 TCP11X2Q5H9J9 407 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 TTC38Q5R3I4 469 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 RNF43Q68DV7 783 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 CNNM4Q6P4Q7 775 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 PI16Q6UXB8 463 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 Q6ZS46 218 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 NCAPG2Q86XI2 1143 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 DGKHQ86XP1 1220 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 FAM114A1Q8IWE2 563 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 PDILTQ8N807 584 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 ZNF713Q8N859 430 aaPredicted RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 CCDC148Q8NFR7 591 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 OR8K1Q8NGG5 319 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 DHX58Q96C10 678 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 DHTKD1Q96HY7 919 aaPredicted RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 ARID3AQ99856 593 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 RIOK1Q9BRS2 568 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 CCSER1Q9C0I3 900 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 CABP5Q9NP86 173 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 SAMSN1Q9NSI8 373 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 GJB4Q9NTQ9 266 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 TCP11L1Q9NUJ3 509 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 ARPP21Q9UBL0 812 aaPredicted RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 RNF14Q9UBS8 474 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS41-214ENST00000490924 DENND2AQ9ULE3 1009 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 ZNF652Q9Y2D9 606 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 THRAP3Q9Y2W1 955 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 SLC4A4Q9Y6R1 1079 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 ROBO3Q96MS0 1386 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 STRCP1A6NGW2 1772 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 COL14A1Q05707 1796 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 DLEC1Q9Y238 1755 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 ATP8B3O60423 1300 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 MYO5AQ9Y4I1 1855 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 CHD4Q14839 1912 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 A6NJR5 290 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 N4BP3O15049 544 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 KRT86O43790 486 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 RHOBTB3O94955 611 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 SCG2P13521 617 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 TNFRSF8P28908 595 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 OAS2P29728 719 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 GUCY1A2P33402 732 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 DNM2P50570 870 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 COPB1P53618 953 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 ADKP55263 362 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 RBL2Q08999 1139 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 KRT31Q15323 416 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 IFIT1BQ5T764 474 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 WWC2Q6AWC2 1192 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 C16orf46Q6P387 395 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 RAD9BQ6WBX8 426 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 TRAPPC11Q7Z392 1133 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 CLEC10AQ8IUN9 316 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 ZSCAN29Q8IWY8 852 aaPredicted RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 ADSSL1Q8N142 457 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 ENAHQ8N8S7 591 aaPredicted RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 EIF1ADQ8N9N8 165 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 C1orf131Q8NDD1 294 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 ZNF507Q8TCN5 953 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS41-214ENST00000490924 CCDC47Q96A33 483 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 ANKZF1Q9H8Y5 726 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 MRPL44Q9H9J2 332 aaKnown RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 BSDC1Q9NW68 430 aaPredicted RBP6.51□□□□□ -1.37
VPS41-214ENST00000490924 ADAM21Q9UKJ8 722 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 CAPN11Q9UMQ6 739 aa6.51□□□□□ -1.37
VPS41-214ENST00000490924 XDHP47989 1333 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 C10orf71Q711Q0 1435 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 SOWAHDA6NJG2 315 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 SRRM3A6NNA2 597 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 KIAA1324LA8MWY0 1029 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 EIF3CLB5ME19 914 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 PSMA7O14818 248 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 NDUFA10O95299 355 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 IPO7O95373 1038 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 SRGNP10124 158 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 PCSK2P16519 638 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 CASP14P31944 242 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 CYLC1P35663 651 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 ARHGAP25P42331 645 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ZBED6P86452 979 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 HLFQ16534 295 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ZSCAN26Q16670 478 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 KIF4BQ2VIQ3 1234 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 GLE1Q53GS7 698 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 NOM1Q5C9Z4 860 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 SLC10A5Q5PT55 438 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ANKRD34AQ69YU3 496 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 CCDC70Q6NSX1 233 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 FDX2Q6P4F2 183 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 LEKR1Q6ZMV7 388 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 GBP6Q6ZN66 633 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 CCDC84Q86UT8 332 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 TEX2Q8IWB9 1127 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms