RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PCDHA10Q9Y5I2 948 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 MAFBQ9Y5Q3 323 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-214ENST00000490398 RRN3P2A6NIE6 340 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 ZNF862O60290 1169 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 GAS7O60861 476 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 KRT2P35908 639 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 TMEM62Q0P6H9 643 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 MKRN4PQ13434 485 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-214ENST00000490398 PLEKHG4Q58EX7 1191 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 FAM160B1Q5W0V3 765 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 MOXD1Q6UVY6 613 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.5■□□□□ 0.87
COL9A3-214ENST00000490398 NEK8Q86SG6 692 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 RPAINQ86UA6 219 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 SMAP1Q8IYB5 467 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-214ENST00000490398 MYLIPQ8WY64 445 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 TEKT3Q9BXF9 490 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 DISC1Q9NRI5 854 aa20.5■□□□□ 0.87
COL9A3-214ENST00000490398 CAND2O75155 1236 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 BAIAP3O94812 1187 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 PARNO95453 639 aaKnown RBP20.49■□□□□ 0.87
COL9A3-214ENST00000490398 MMP1P03956 469 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 PSAPP07602 524 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 TAF2Q6P1X5 1199 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 MTHFD1LQ6UB35 978 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 HERC6Q8IVU3 1022 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 DIS3L2Q8IYB7 885 aaKnown RBP20.49■□□□□ 0.87
COL9A3-214ENST00000490398 ZNF576Q9H609 170 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 SAMM50Q9Y512 469 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 IGSF9BQ9UPX0 1349 aa20.49■□□□□ 0.87
COL9A3-214ENST00000490398 WDR64B1ANS9 1081 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 HBP1O60381 514 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 CCNT1O60563 726 aaKnown RBP20.48■□□□□ 0.87
COL9A3-214ENST00000490398 KLRC1P26715 233 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 SLC26A2P50443 739 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 RABEP1Q15276 862 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 SPRED2Q7Z698 418 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 POTEDQ86YR6 584 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 HAS1Q92839 578 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 ZSCAN31Q96LW9 406 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-214ENST00000490398 KCNMB3Q9NPA1 279 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 MSRAQ9UJ68 235 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 PCDHA2Q9Y5H9 948 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 CDY2AQ9Y6F7 541 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 PTPRSQ13332 1948 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 PRUNE2Q8WUY3 3088 aa20.48■□□□□ 0.87
COL9A3-214ENST00000490398 GBF1Q92538 1859 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 EML1O00423 815 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 GHRP10912 638 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 LPIN1Q14693 890 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 RAB30Q15771 203 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 PPP4R3AQ6IN85 833 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 CKAP2LQ8IYA6 745 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 TBC1D32Q96NH3 1257 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 SLC9A7Q96T83 725 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 LLPHQ9BRT6 129 aaKnown RBP20.47■□□□□ 0.87
COL9A3-214ENST00000490398 VAV3Q9UKW4 847 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 STXBP5LQ9Y2K9 1186 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 PCDHA11Q9Y5I1 949 aa20.47■□□□□ 0.87
COL9A3-214ENST00000490398 TMEM265A0A087WTH1 108 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 ABHD14A-ACY1A0A1B0GW23 586 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 LCHNA4D1U4 455 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 TMEM150BA6NC51 233 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 STBD1O95210 358 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 CA3P07451 260 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 KCNJ6P48051 423 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 MRPS6P82932 125 aaKnown RBP20.46■□□□□ 0.87
COL9A3-214ENST00000490398 IKBKEQ14164 716 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 FAM117BQ6P1L5 589 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 MIER3Q7Z3K6 550 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 PHOSPHO2Q8TCD6 241 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 AGO3Q9H9G7 860 aaKnown RBP20.46■□□□□ 0.87
COL9A3-214ENST00000490398 TCEAL9Q9UHQ7 104 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 SIP14410 1827 aa20.46■□□□□ 0.87
COL9A3-214ENST00000490398 UNC80Q8N2C7 3258 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 SMIM35A0A1B0GVV1 85 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-214ENST00000490398 C22orf31O95567 290 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 PRKCEQ02156 737 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 ZNF484Q5JVG2 852 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 FBXO47Q5MNV8 452 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 KIAA0319LQ8IZA0 1049 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 BBXQ8WY36 941 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-214ENST00000490398 SEPT8Q92599 483 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 PRDM12Q9H4Q4 367 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 CDHR5Q9HBB8 845 aa20.45■□□□□ 0.86
COL9A3-214ENST00000490398 SH2B1Q9NRF2 756 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-214ENST00000490398 JAK3P52333 1124 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 C8orf76Q96K31 380 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 SH2D3AQ9BRG2 576 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 IFIH1Q9BYX4 1025 aaKnown RBP20.44■□□□□ 0.86
COL9A3-214ENST00000490398 CERS4Q9HA82 394 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 BRMS1Q9HCU9 246 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 COL1A2P08123 1366 aa20.44■□□□□ 0.86
COL9A3-214ENST00000490398 OATP04181 439 aa20.43■□□□□ 0.86
COL9A3-214ENST00000490398 GCFC2P16383 781 aaKnown RBP20.43■□□□□ 0.86
COL9A3-214ENST00000490398 CD52P31358 61 aa20.43■□□□□ 0.86
COL9A3-214ENST00000490398 SFNP31947 248 aa20.43■□□□□ 0.86
COL9A3-214ENST00000490398 TRIM29Q14134 588 aa20.43■□□□□ 0.86
COL9A3-214ENST00000490398 ADGRE1Q14246 886 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms