RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 LACTBP83111 547 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-220ENST00000489318 MYL5Q02045 173 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 COASYQ13057 564 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 DHX8Q14562 1220 aaKnown RBP12.78□□□□□ -0.36
C9orf3-220ENST00000489318 FOXR2Q6PJQ5 311 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 DYMQ7RTS9 669 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ADSSL1Q8N142 457 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 AOPEPQ8N6M6 819 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ENOX1Q8TC92 643 aaKnown RBP12.78□□□□□ -0.36
C9orf3-220ENST00000489318 PIGOQ8TEQ8 1089 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 MED15Q96RN5 788 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 REEP2Q9BRK0 252 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ABHD16BQ9H3Z7 469 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 GABBR1Q9UBS5 961 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 ODF2LQ9ULJ1 636 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 GDAQ9Y2T3 454 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 PCDHA2Q9Y5H9 948 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 SYNRGQ9UMZ2 1314 aa12.78□□□□□ -0.36
C9orf3-220ENST00000489318 SMTNL1A8MU46 457 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 ZBTB39O15060 712 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 SSBP05455 408 aaKnown RBP eCLIP12.77□□□□□ -0.37
C9orf3-220ENST00000489318 TXNP10599 105 aaKnown RBP12.77□□□□□ -0.37
C9orf3-220ENST00000489318 FCGRTP55899 365 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 ARHGAP1Q07960 439 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 STK4Q13043 487 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 GRM1Q13255 1194 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 LY6KQ17RY6 165 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 SARM1Q6SZW1 724 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 ANO5Q75V66 913 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 CCDC65Q8IXS2 484 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 SMYD4Q8IYR2 804 aaPredicted RBP12.77□□□□□ -0.37
C9orf3-220ENST00000489318 PCYT2Q99447 389 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 GPR20Q99678 358 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 TIPINQ9BVW5 301 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 HSD3B7Q9H2F3 369 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 PDGFCQ9NRA1 345 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 OLFML3Q9NRN5 406 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 PANK4Q9NVE7 773 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 RWDD2AQ9UIY3 292 aa12.77□□□□□ -0.37
C9orf3-220ENST00000489318 ARHGEF35A5YM69 484 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 BECN2A8MW95 431 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 GOLGA6L19H0YKK7 550 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 NKRFO15226 690 aaKnown RBP eCLIP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 XRCC5P13010 732 aaKnown RBP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 HOXD8P13378 290 aaPredicted RBP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 GAP43P17677 238 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 DEKP35659 375 aaKnown RBP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 PRCPP42785 496 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 PRKCEQ02156 737 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 PAK1Q13153 545 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 MAPK7Q13164 816 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 HSDL1Q3SXM5 330 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 DUSP28Q4G0W2 176 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 XKR3Q5GH77 459 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 FAM26FQ5R3K3 315 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 GUF1Q8N442 669 aaKnown RBP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 SEPT1Q8WYJ6 367 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 DHTKD1Q96HY7 919 aaPredicted RBP12.76□□□□□ -0.37
C9orf3-220ENST00000489318 PDLIM2Q96JY6 352 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 MLXIPQ9HAP2 919 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 ZNF302Q9NR11 478 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 FLRT1Q9NZU1 646 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 NRBP1Q9UHY1 535 aa12.76□□□□□ -0.37
C9orf3-220ENST00000489318 NPHP3-ACAD11A0A0J9YXS1 232 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 GH1P01241 217 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 OATP04181 439 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 KRT18P05783 430 aaKnown RBP12.75□□□□□ -0.37
C9orf3-220ENST00000489318 IDEP14735 1019 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 ZNF18P17022 549 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 ATP4AP20648 1035 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 TCF7P36402 384 aaPredicted RBP12.75□□□□□ -0.37
C9orf3-220ENST00000489318 VEGFBP49765 207 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 STIM1Q13586 685 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 ACVR2BQ13705 512 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 LAMC2Q13753 1193 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 BMT2Q1RMZ1 405 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 FAM160B1Q5W0V3 765 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 SWSAP1Q6NVH7 229 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 PADI6Q6TGC4 694 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 OTUD6AQ7L8S5 288 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 PLPPR4Q7Z2D5 763 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 DHX37Q8IY37 1157 aaKnown RBP12.75□□□□□ -0.37
C9orf3-220ENST00000489318 TRIM47Q96LD4 638 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 NIFKQ9BYG3 293 aaKnown RBP12.75□□□□□ -0.37
C9orf3-220ENST00000489318 SEL1LQ9UBV2 794 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 PPME1Q9Y570 386 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 COL4A3BPQ9Y5P4 624 aa12.75□□□□□ -0.37
C9orf3-220ENST00000489318 UBE4BO95155 1302 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 PSMA7O14818 248 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 BACH1O14867 736 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 AP5Z1O43299 807 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 TBCAO75347 108 aaKnown RBP12.74□□□□□ -0.37
C9orf3-220ENST00000489318 ZNF865P0CJ78 1059 aaPredicted RBP12.74□□□□□ -0.37
C9orf3-220ENST00000489318 CCNE1P24864 410 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 ADCYAP1R1P41586 468 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 PSMC4P43686 418 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 SLC26A2P50443 739 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 SP4Q02446 784 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 CACNB1Q02641 598 aaPredicted RBP12.74□□□□□ -0.37
C9orf3-220ENST00000489318 TMEM63BQ5T3F8 832 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms