RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	AFAP1L1	Q8TED9	768 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	TBC1D5	Q92609	795 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	DHX38	Q92620	1227 aa	Known RBP	10.06	□□□□□ -0.8
USP4-213	ENST00000488520	ANKS1A	Q92625	1134 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	CTAGE1	Q96RT6	745 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	ARHGAP9	Q9BRR9	750 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	ALG1	Q9BT22	464 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	SLC12A7	Q9Y666	1083 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	TAF6L	Q9Y6J9	622 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	WDR19	Q8NEZ3	1342 aa		10.06	□□□□□ -0.8
USP4-213	ENST00000488520	PI4K2B	G5E9Z4	385 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	NBN	O60934	754 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	MMP3	P08254	477 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	CKB	P12277	381 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	IL9	P15248	144 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	SELP	P16109	830 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	KCNA5	P22460	613 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	EDNRB	P24530	442 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	KIF5B	P33176	963 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	NOV	P48745	357 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	ZNF543	Q08ER8	600 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	ALYREF	Q86V81	257 aa	Known RBP	10.05	□□□□□ -0.8
USP4-213	ENST00000488520	ENAH	Q8N8S7	591 aa	Predicted RBP	10.05	□□□□□ -0.8
USP4-213	ENST00000488520	DNER	Q8NFT8	737 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	CTCFL	Q8NI51	663 aa	Predicted RBP	10.05	□□□□□ -0.8
USP4-213	ENST00000488520	CAGE1	Q8TC20	777 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	IGDCC4	Q8TDY8	1250 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	KAT2B	Q92831	832 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	TAAR1	Q96RJ0	339 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	UIMC1	Q96RL1	719 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	LRRC2	Q9BYS8	371 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	UBA5	Q9GZZ9	404 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	UBE2Z	Q9H832	354 aa	Predicted RBP	10.05	□□□□□ -0.8
USP4-213	ENST00000488520	ATP13A2	Q9NQ11	1180 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	HDAC6	Q9UBN7	1215 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	EVPL	Q92817	2033 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	ZNF318	Q5VUA4	2279 aa		10.05	□□□□□ -0.8
USP4-213	ENST00000488520	CCDC196	A0A1B0GTZ2	297 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	LINC01553	A4QN01	128 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520		B4DLN1	442 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	CAPN5	O15484	640 aa	Predicted RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	DHX16	O60231	1041 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	SORBS3	O60504	671 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GJB5	O95377	273 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GH1	P01241	217 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	PARP1	P09874	1014 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	CPA1	P15085	419 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GNAQ	P50148	359 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	MRPL12	P52815	198 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	ERVK-21	P61565	698 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	ZNF200	P98182	395 aa	Predicted RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	ARHGAP1	Q07960	439 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	RABEP1	Q15276	862 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GPATCH4	Q5T3I0	446 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	CCDC62	Q6P9F0	684 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	C7orf31	Q8N865	590 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	BRF1	Q92994	677 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	TGS1	Q96RS0	853 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	RAD9A	Q99638	391 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	C17orf80	Q9BSJ5	609 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	UPF3B	Q9BZI7	483 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	LMCD1	Q9NZU5	365 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	GMPR2	Q9P2T1	348 aa	Known RBP	10.04	□□□□□ -0.8
USP4-213	ENST00000488520	MAP4K5	Q9Y4K4	846 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	PLXNA4	Q9HCM2	1894 aa		10.04	□□□□□ -0.8
USP4-213	ENST00000488520	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.03	□□□□□ -0.8
USP4-213	ENST00000488520	KLF18	A0A0U1RQI7	1052 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	SH2B2	O14492	632 aa	Predicted RBP	10.03	□□□□□ -0.8
USP4-213	ENST00000488520	ZBTB43	O43298	467 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	CXCL10	P02778	98 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	ZNF286B	P0CG31	522 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	ANTXR2	P58335	489 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	PTK2	Q05397	1052 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	NR5A1	Q13285	461 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	IKBKE	Q14164	716 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	SEC23A	Q15436	765 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	ZNF618	Q5T7W0	954 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	CPLX2	Q6PUV4	134 aa	Known RBP	10.03	□□□□□ -0.8
USP4-213	ENST00000488520	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
USP4-213	ENST00000488520	EP400NL	Q6ZTU2	488 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	FAM178B	Q8IXR5	827 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	GJD3	Q8N144	294 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	WNT8B	Q93098	351 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	TCEANC2	Q96MN5	208 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	TBC1D32	Q96NH3	1257 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	LZTS2	Q9BRK4	669 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	LY9	Q9HBG7	655 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	COL20A1	Q9P218	1284 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	GTF2IRD1	Q9UHL9	959 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	GPSM3	Q9Y4H4	160 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	PIEZO1	Q92508	2521 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	MYO10	Q9HD67	2058 aa		10.03	□□□□□ -0.8
USP4-213	ENST00000488520	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.02	□□□□□ -0.81
USP4-213	ENST00000488520	CPLX1	O14810	134 aa		10.02	□□□□□ -0.81
USP4-213	ENST00000488520	EIF2AK2	P19525	551 aa	Known RBP	10.02	□□□□□ -0.81
USP4-213	ENST00000488520	MCM2	P49736	904 aa		10.02	□□□□□ -0.81
USP4-213	ENST00000488520	AKAP17A	Q02040	695 aa	Known RBP	10.02	□□□□□ -0.81
USP4-213	ENST00000488520	APOBR	Q0VD83	1088 aa		10.02	□□□□□ -0.81
USP4-213	ENST00000488520	STXBP2	Q15833	593 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms