RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 BEND4Q6ZU67 534 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 TSPYL5Q86VY4 417 aaPredicted RBP4.24□□□□□ -1.73
GPNMB-212ENST00000487890 DZIP1LQ8IYY4 767 aaKnown RBP4.24□□□□□ -1.73
GPNMB-212ENST00000487890 MFSD4AQ8N468 514 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 LINC00116Q8NCU8 138 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 GIMAP7Q8NHV1 300 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 DPF3Q92784 378 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 HSPBAP1Q96EW2 488 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 CHAMP1Q96JM3 812 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 LRGUKQ96M69 825 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 PTCHD1Q96NR3 888 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 SARGQ9BW04 601 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 FOXP3Q9BZS1 431 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 SLC12A5Q9H2X9 1139 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 SMURF1Q9HCE7 757 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 PRDM11Q9NQV5 511 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 GTF2IRD1Q9UHL9 959 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 TCFL5Q9UL49 500 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 TIMM13Q9Y5L4 95 aaPredicted RBP4.24□□□□□ -1.73
GPNMB-212ENST00000487890 U3KQE9 123 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 RAB3GAP2Q9H2M9 1393 aa4.24□□□□□ -1.73
GPNMB-212ENST00000487890 SPATA31A6Q5VVP1 1343 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ADGRF5Q8IZF2 1346 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 CNTNAP5Q8WYK1 1306 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 PTCH1Q13635 1447 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 SRCAPQ6ZRS2 3230 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 TCRBV5S4A2TA0A5A2 114 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 SLC12A8A0AV02 714 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 C7orf72A4D263 438 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 TRIM75PA6NK02 468 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 GOLGA8AA7E2F4 631 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 GOLGA8BA8MQT2 603 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 C9orf172C9J069 976 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 H7C1D1 291 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ZNF561-AS1K7EIQ3 104 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 XPOTO43592 962 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 FKTNO75072 461 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 CFBP00751 764 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ASGR2P07307 311 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 U2AF1L5P0DN76 240 aaPredicted RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 COL6A2P12110 1019 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 KRT15P19012 456 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 PCBP3P57721 371 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 SMAD3P84022 425 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 U2AF1Q01081 240 aaKnown RBP eCLIP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 LAPTM5Q13571 262 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 GTF2H3Q13889 308 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 GBX1Q14549 363 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 PDCD1Q15116 288 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 SMAD2Q15796 467 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 UVSSAQ2YD98 709 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ARHGAP29Q52LW3 1261 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 COBLL1Q53SF7 1204 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 LCE2AQ5TA79 106 aaPredicted RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ANGEL2Q5VTE6 544 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 TMEM132EQ6IEE7 984 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 RASSF3Q86WH2 238 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 TMEM52Q8NDY8 209 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 PJA1Q8NG27 643 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 UBE2Q2Q8WVN8 375 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 LMBR1Q8WVP7 490 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ELF4Q99607 663 aaPredicted RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 BOCQ9BWV1 1114 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 PRDM16Q9HAZ2 1276 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 CLDND1Q9NY35 253 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 RGS17Q9UGC6 210 aaPredicted RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 USP25Q9UHP3 1055 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 RCAN3Q9UKA8 241 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ZNF652Q9Y2D9 606 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 NOC2LQ9Y3T9 749 aaKnown RBP4.23□□□□□ -1.73
GPNMB-212ENST00000487890 LRP6O75581 1613 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 ANKRD30BQ9BXX2 1392 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 KNDC1Q76NI1 1749 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 C1orf167Q5SNV9 1468 aa4.23□□□□□ -1.73
GPNMB-212ENST00000487890 SPATA31E1Q6ZUB1 1445 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 LAMC1P11047 1609 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 TRBV23OR9-2A0A075B6M9 112 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 TMEM82A0PJX8 343 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 KLHL33A6NCF5 533 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 WTIPA6NIX2 430 aaPredicted RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 FAM170BA6NMN3 283 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 GNAT3A8MTJ3 354 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 FAM155AB1AL88 458 aaPredicted RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 APAF1O14727 1248 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 PPP1R11O60927 126 aaPredicted RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 ZRANB2O95218 330 aaKnown RBP eCLIP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 IL33O95760 270 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 SPATA31C1P0DKV0 1188 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 RPL11P62913 178 aaKnown RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 PHC1P78364 1004 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 KRT85P78386 507 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 NRG1Q02297 640 aaPredicted RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 ADGRE1Q14246 886 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 DHX8Q14562 1220 aaKnown RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 MBTPS1Q14703 1052 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 CLUL1Q15846 466 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 NKPD1Q17RQ9 610 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 C4orf46Q504U0 113 aa4.22□□□□□ -1.73
GPNMB-212ENST00000487890 ZNF772Q68DY9 489 aaPredicted RBP4.22□□□□□ -1.73
GPNMB-212ENST00000487890 B3GNT9Q6UX72 402 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms