RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CCDC170Q8IYT3 715 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 TRIM7Q9C029 511 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 CCSER1Q9C0I3 900 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 EPC1Q9H2F5 836 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 RNF146Q9NTX7 359 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 ADAMTS1Q9UHI8 967 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 HACL1Q9UJ83 578 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 TCRBV5S4A2TA0A5A2 114 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 USP11P51784 963 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 TOGARAM2Q6ZUX3 1019 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 SLC17A8Q8NDX2 589 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 RPS6KC1Q96S38 1066 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 AKT3Q9Y243 479 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 PSAPP07602 524 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 ATF7P17544 494 aaPredicted RBP11.96□□□□□ -0.5
HDAC6-228ENST00000486227 SETDB1Q15047 1291 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 LDHDQ86WU2 507 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 LMNTD2Q8IXW0 634 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 HPS3Q969F9 1004 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 MRRFQ96E11 262 aaKnown RBP11.96□□□□□ -0.5
HDAC6-228ENST00000486227 NYAP2Q9P242 653 aa11.96□□□□□ -0.5
HDAC6-228ENST00000486227 WTIPA6NIX2 430 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 ANKRD65E5RJM6 399 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 PIK3CAP42336 1068 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MXI1P50539 228 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 KIF11P52732 1056 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MFAP3P55082 362 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 GKAP1Q5VSY0 366 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 PPP4R3CPQ6ZMV5 832 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 ENGASEQ8NFI3 743 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 TMEM60Q9H2L4 133 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 TRIM66O15016 1216 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 ENTPD3O75355 529 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 LMNB1P20700 586 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 CXCR5P32302 372 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 PTK2Q05397 1052 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 FMR1Q06787 632 aaKnown RBP eCLIP11.95□□□□□ -0.52e-6■■■■□ 22.5
HDAC6-228ENST00000486227 ST3GAL1Q11201 340 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 KRT71Q3SY84 523 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MMS19Q96T76 1030 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 TRIM9Q9C026 710 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MTFR1LQ9H019 292 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 IPO5O00410 1097 aaKnown RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 XPOTO43592 962 aaKnown RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 HOXA7P31268 230 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MESDQ14696 234 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 Q3C1V9 767 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 NCAPGQ9BPX3 1015 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 UBE2TQ9NPD8 197 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 ODF2LQ9ULJ1 636 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 MOCS3O95396 460 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 PADI6Q6TGC4 694 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 AGXT2Q9BYV1 514 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 GPBP1L1Q9HC44 474 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-228ENST00000486227 FAM169AQ9Y6X4 670 aa11.95□□□□□ -0.5
HDAC6-228ENST00000486227 GCKP35557 465 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 NFIAQ12857 509 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 FASTKD5Q7L8L6 764 aaKnown RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 GUF1Q8N442 669 aaKnown RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ABHD10Q9NUJ1 306 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ZNF70Q9UC06 446 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 TUBE1Q9UJT0 475 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 FTCDO95954 541 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ATP2A2P16615 1042 aaKnown RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 NSFP46459 744 aaKnown RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 TTC19Q6DKK2 380 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 JMJD4Q9H9V9 463 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 NUB1Q9Y5A7 615 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 PSMD14O00487 310 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 DAPK3O43293 454 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 AP5Z1O43299 807 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 PLA2G4AP47712 749 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 IFT88Q13099 833 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 SEC23AQ15436 765 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ALS2CLQ60I27 953 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 DPH5Q9H2P9 285 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 RGL1Q9NZL6 768 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 LRFN2Q9ULH4 789 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 PCDHA13Q9Y5I0 950 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ZMYND10O75800 440 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 SERPING1P05155 500 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 MARK3P27448 753 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 CTNNA1P35221 906 aaKnown RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 VPS41P49754 854 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 PDIA5Q14554 519 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 UAP1Q16222 522 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-228ENST00000486227 VGLL2Q8N8G2 317 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 ZMYND12Q9H0C1 365 aa11.94□□□□□ -0.5
HDAC6-228ENST00000486227 TTC26A0AVF1 554 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 WDR64B1ANS9 1081 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 GAS8O95995 478 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 IFNB1P01574 187 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 NR3C1P04150 777 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 INTS8Q75QN2 995 aaKnown RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PROM2Q8N271 834 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 WDR24Q96S15 920 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 MAP3K14Q99558 947 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 TMEM51Q9NW97 253 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms