RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 STAT5BP51692 787 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 GUCA2AQ02747 115 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 FPGSQ05932 587 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 BECN1Q14457 450 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 TMEM266Q2M3C6 531 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 HSDL1Q3SXM5 330 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 C1orf53Q5VUE5 145 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 PDXDC2PQ6P474 469 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 MIER3Q7Z3K6 550 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 SMAP1Q8IYB5 467 aaPredicted RBP9.07□□□□□ -0.96
USP40-216ENST00000485943 DAGLBQ8NCG7 672 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 ATP6V0A1Q93050 837 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 TMX3Q96JJ7 454 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 SCLT1Q96NL6 688 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 NFASCO94856 1347 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 WDR64B1ANS9 1081 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 ARP10275 920 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 PTGS1P23219 599 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 SFNP31947 248 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 JAK3P52333 1124 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 ACTR2P61160 394 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 PPFIA1Q13136 1202 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 CALCRLQ16602 461 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 TMEM63BQ5T3F8 832 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 LARP1BQ659C4 914 aaKnown RBP9.06□□□□□ -0.96
USP40-216ENST00000485943 ANKRD33Q7Z3H0 272 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 UBE2Q1Q7Z7E8 422 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 SLFN12Q8IYM2 578 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 IL17RAQ96F46 866 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 ZFRQ96KR1 1074 aaKnown RBP9.06□□□□□ -0.96
USP40-216ENST00000485943 GPR20Q99678 358 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 RAB34Q9BZG1 259 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 AGO4Q9HCK5 861 aaKnown RBP9.06□□□□□ -0.96
USP40-216ENST00000485943 ZNF302Q9NR11 478 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 PDLIM7Q9NR12 457 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 CEP131Q9UPN4 1083 aa9.06□□□□□ -0.96
USP40-216ENST00000485943 K7ELQ4 463 aaPredicted RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 MEIS1O00470 390 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 B4GALT4O60513 344 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 NEMFO60524 1076 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 DTNBO60941 627 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 RGS20O76081 388 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 TIMP1P01033 207 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 RPLP2P05387 115 aaKnown RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 CFHP08603 1231 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 CYP2C9P11712 490 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 KCNA2P16389 499 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 TMOD1P28289 359 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 MCM7P33993 719 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 MAGEA10P43363 369 aaPredicted RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 SLC26A2P50443 739 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 CCL23P55773 120 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 SP2Q02086 613 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 NR5A1Q13285 461 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 NCAPH2Q6IBW4 605 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 ZNF746Q6NUN9 644 aaPredicted RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 MOXD1Q6UVY6 613 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 HOMEZQ8IX15 550 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 FAM126BQ8IXS8 530 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 RASSF8Q8NHQ8 419 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 ERMNQ8TAM6 284 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 CYP2W1Q8TAV3 490 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 CAGE1Q8TC20 777 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 BADQ92934 168 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 FAM167AQ96KS9 214 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 RNPC3Q96LT9 517 aaKnown RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 TRPV6Q9H1D0 765 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 NRBP2Q9NSY0 501 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 TRMT13Q9NUP7 481 aaKnown RBP9.05□□□□□ -0.96
USP40-216ENST00000485943 HDAC6Q9UBN7 1215 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 PCDHA10Q9Y5I2 948 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 NRCAMQ92823 1304 aa9.05□□□□□ -0.96
USP40-216ENST00000485943 ALPK3Q96L96 1907 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 RRN3P2A6NIE6 340 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 BTBD18B2RXH4 712 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 FAM86B1E9PN63 330 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 HRO43593 1189 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 ATP9AO75110 1047 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 PARNO95453 639 aaKnown RBP9.04□□□□□ -0.96
USP40-216ENST00000485943 CTDNEP1O95476 244 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 TDP2O95551 362 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 F2P00734 622 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 FAM86B2P0C5J1 330 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 SMIM10L2AP0DMW4 78 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 SMIM10L2BP0DMW5 78 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 THPOP40225 353 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 KCNJ6P48051 423 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 NKX3-2P78367 333 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 LSM11P83369 360 aaKnown RBP eCLIP9.04□□□□□ -0.96
USP40-216ENST00000485943 FAAP100Q0VG06 881 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 SNX17Q15036 470 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 CCSAPQ6IQ19 270 aaPredicted RBP9.04□□□□□ -0.96
USP40-216ENST00000485943 SWSAP1Q6NVH7 229 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 PSRC1Q6PGN9 363 aaPredicted RBP9.04□□□□□ -0.96
USP40-216ENST00000485943 ADGRD1Q6QNK2 874 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 DEFB128Q7Z7B8 93 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 TRIM50Q86XT4 487 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 PPP1R13LQ8WUF5 828 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 FAM20AQ96MK3 541 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 MAP7D2Q96T17 732 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms