RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TCTN1Q2MV58 587 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 PRR16Q569H4 304 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 MARCH8Q5T0T0 291 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 POTEBQ6S5H4 581 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 ABHD15Q6UXT9 468 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 RUFY4Q6ZNE9 571 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 FAM184AQ8NB25 1140 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 DAGLBQ8NCG7 672 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 DNAJB3Q8WWF6 145 aa18.79■□□□□ 0.6
TRIM54-203ENST00000485306 IGKV6D-21A0A0A0MT36 114 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 DHX15O43143 795 aaKnown RBP18.78■□□□□ 0.6
TRIM54-203ENST00000485306 PDIA4P13667 645 aaKnown RBP18.78■□□□□ 0.6
TRIM54-203ENST00000485306 TAP1Q03518 808 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 ADGRE1Q14246 886 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 IER5Q5VY09 327 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 GALNT17Q6IS24 598 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 ZNF746Q6NUN9 644 aaPredicted RBP18.78■□□□□ 0.6
TRIM54-203ENST00000485306 TMCO2Q7Z6W1 182 aaPredicted RBP18.78■□□□□ 0.6
TRIM54-203ENST00000485306 MYOCDQ8IZQ8 938 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 BLIDQ8IZY5 108 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 PPM1EQ8WY54 764 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 IFIH1Q9BYX4 1025 aaKnown RBP18.78■□□□□ 0.6
TRIM54-203ENST00000485306 CERS4Q9HA82 394 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 ZNF302Q9NR11 478 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 INSL6Q9Y581 213 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 PTPRSQ13332 1948 aa18.78■□□□□ 0.6
TRIM54-203ENST00000485306 M0QZ92 97 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 GTPBP6O43824 516 aaPredicted RBP18.77■□□□□ 0.6
TRIM54-203ENST00000485306 HBP1O60381 514 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 JAK2O60674 1132 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 CCNE2O96020 404 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 CHRNA1P02708 482 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 FDPSP14324 419 aaKnown RBP18.77■□□□□ 0.6
TRIM54-203ENST00000485306 XBP1P17861 261 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 KRT76Q01546 638 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 NPY5RQ15761 445 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 SWSAP1Q6NVH7 229 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 FAM117BQ6P1L5 589 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 PDXDC2PQ6P474 469 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.77■□□□□ 0.6
TRIM54-203ENST00000485306 SMAP1Q8IYB5 467 aaPredicted RBP18.77■□□□□ 0.6
TRIM54-203ENST00000485306 ARNTL2Q8WYA1 636 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 KCNJ14Q9UNX9 436 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 PCDHA2Q9Y5H9 948 aa18.77■□□□□ 0.6
TRIM54-203ENST00000485306 MICAL3Q7RTP6 2002 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 M0R2N6 131 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 PSAPP07602 524 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 PDCP20941 246 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 GJB2P29033 226 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 CKAP2LQ8IYA6 745 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 NME8Q8N427 588 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 IPO9Q96P70 1041 aaKnown RBP18.76■□□□□ 0.59
TRIM54-203ENST00000485306 UIMC1Q96RL1 719 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 PHF20Q9BVI0 1012 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 FAM49AQ9H0Q0 323 aaPredicted RBP18.76■□□□□ 0.59
TRIM54-203ENST00000485306 PCDHA10Q9Y5I2 948 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 CHD9Q3L8U1 2897 aa18.76■□□□□ 0.59
TRIM54-203ENST00000485306 MYH9P35579 1960 aaKnown RBP18.75■□□□□ 0.59
TRIM54-203ENST00000485306 EDIL3O43854 480 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 MRPS6P82932 125 aaKnown RBP18.75■□□□□ 0.59
TRIM54-203ENST00000485306 MGAT3Q09327 533 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 CCDC85BQ15834 202 aaPredicted RBP18.75■□□□□ 0.59
TRIM54-203ENST00000485306 ZNF484Q5JVG2 852 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 CCDC60Q8IWA6 550 aaPredicted RBP18.75■□□□□ 0.59
TRIM54-203ENST00000485306 TBCKQ8TEA7 893 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 ATP8B4Q8TF62 1192 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 TOP1MTQ969P6 601 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 TSPYL2Q9H2G4 693 aaPredicted RBP18.75■□□□□ 0.59
TRIM54-203ENST00000485306 SAMM50Q9Y512 469 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 CDY2AQ9Y6F7 541 aa18.75■□□□□ 0.59
TRIM54-203ENST00000485306 COL1A2P08123 1366 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 SMIM35A0A1B0GVV1 85 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 LCHNA4D1U4 455 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 GHRP10912 638 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 POU3F3P20264 500 aaPredicted RBP18.74■□□□□ 0.59
TRIM54-203ENST00000485306 KLRC1P26715 233 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 MKRN4PQ13434 485 aaPredicted RBP18.74■□□□□ 0.59
TRIM54-203ENST00000485306 MTHFD1LQ6UB35 978 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 USP38Q8NB14 1042 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 TRAPPC12Q8WVT3 735 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 LENG9Q96B70 501 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 TGS1Q96RS0 853 aaKnown RBP18.74■□□□□ 0.59
TRIM54-203ENST00000485306 OSBPL7Q9BZF2 842 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 GJB4Q9NTQ9 266 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 SQORQ9Y6N5 450 aa18.74■□□□□ 0.59
TRIM54-203ENST00000485306 WDR64B1ANS9 1081 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 RFXAPO00287 272 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 UPP2O95045 317 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 TRIM29Q14134 588 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 LPIN1Q14693 890 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 FBXO47Q5MNV8 452 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 TSHZ1Q6ZSZ6 1077 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 MICALL1Q8N3F8 863 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 BBXQ8WY36 941 aaPredicted RBP18.73■□□□□ 0.59
TRIM54-203ENST00000485306 RIT2Q99578 217 aa18.73■□□□□ 0.59
TRIM54-203ENST00000485306 MAFBQ9Y5Q3 323 aaPredicted RBP18.73■□□□□ 0.59
TRIM54-203ENST00000485306 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.72■□□□□ 0.59
TRIM54-203ENST00000485306 MSH4O15457 936 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 GAS7O60861 476 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 ARHGEF15O94989 841 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms