RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 INCENPQ9NQS7 918 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 IFT57Q9NWB7 429 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 GALNT8Q9NY28 637 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 CYP17A1P05093 508 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 ATP2A2P16615 1042 aaKnown RBP8.52□□□□□ -1.05
USP40-213ENST00000483216 SEPT7Q16181 437 aaKnown RBP8.52□□□□□ -1.05
USP40-213ENST00000483216 PHF19Q5T6S3 580 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 DPP8Q6V1X1 898 aaPredicted RBP8.52□□□□□ -1.05
USP40-213ENST00000483216 STPG3Q8N7X2 389 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 KIAA1958Q8N8K9 716 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 L2HGDHQ9H9P8 463 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 OXSMQ9NWU1 459 aa8.52□□□□□ -1.05
USP40-213ENST00000483216 ADAMTS20P59510 1910 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 ZNF891A8MT65 544 aaPredicted RBP8.51□□□□□ -1.05
USP40-213ENST00000483216 GOLGA6L22H0YM25 854 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 SASH1O94885 1247 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 MPIG6BO95866 241 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 KNG1P01042 644 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 MC4RP32245 332 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 MASP1P48740 699 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 SCNN1BP51168 640 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 TRMT10BQ6PF06 316 aaKnown RBP8.51□□□□□ -1.05
USP40-213ENST00000483216 RNF180Q86T96 592 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 NXPE1Q8N323 547 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 TXNDC5Q8NBS9 432 aaKnown RBP8.51□□□□□ -1.05
USP40-213ENST00000483216 HIPK4Q8NE63 616 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 YTHDC1Q96MU7 727 aaKnown RBP8.51□□□□□ -1.05
USP40-213ENST00000483216 TACO1Q9BSH4 297 aaKnown RBP8.51□□□□□ -1.05
USP40-213ENST00000483216 PCIF1Q9H4Z3 704 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 PRKAB1Q9Y478 270 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 SPO11Q9Y5K1 396 aa8.51□□□□□ -1.05
USP40-213ENST00000483216 SKOR2Q2VWA4 1001 aaPredicted RBP8.5□□□□□ -1.05
USP40-213ENST00000483216 SMC1BQ8NDV3 1235 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 OR2W6PQ8NHA6 318 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 BTBD2Q9BX70 525 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 AMNQ9BXJ7 453 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP40-213ENST00000483216 PARD6AQ9NPB6 346 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 UCKL1Q9NWZ5 548 aa8.5□□□□□ -1.05
USP40-213ENST00000483216 PRAMEF22A3QJZ6 481 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 C9orf118A6NHY6 69 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 NOBOXO60393 691 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 STAT3P40763 770 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 ECE1P42892 770 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 SART3Q15020 963 aaKnown RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 STILQ15468 1287 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 RGL3Q3MIN7 710 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 MCTP2Q6DN12 878 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 CXXC5Q7LFL8 322 aaKnown RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 RTN4RL1Q86UN2 441 aaPredicted RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 EFHBQ8N7U6 833 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 LEO1Q8WVC0 666 aaPredicted RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 FOXRED1Q96CU9 486 aaPredicted RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 ELF4Q99607 663 aaPredicted RBP8.49□□□□□ -1.05
USP40-213ENST00000483216 TMEM168Q9H0V1 697 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 ZCCHC4Q9H5U6 513 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 CAAP1Q9H8G2 361 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 FTSJ1Q9UET6 329 aa8.49□□□□□ -1.05
USP40-213ENST00000483216 KLHL18O94889 574 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 SLC9A1P19634 815 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 OCRLQ01968 901 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 DHCR24Q15392 516 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 FBLN7Q53RD9 439 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 NME9Q86XW9 330 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 SYT8Q8NBV8 401 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 CHTF18Q8WVB6 975 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 E2F7Q96AV8 911 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 C16orf92Q96LL3 132 aa8.48□□□□□ -1.05
USP40-213ENST00000483216 THG1LQ9NWX6 298 aaKnown RBP8.48□□□□□ -1.05
USP40-213ENST00000483216 H0Y858 1186 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 CYP1A1P04798 512 aaPredicted RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 VIL1P09327 827 aaKnown RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 PTX3P26022 381 aaPredicted RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 GJA9P57773 515 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 IL13RA1P78552 427 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 KIAA2012Q0VF49 1180 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 EPHA7Q15375 998 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 NT5DC1Q5TFE4 455 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 DDX46Q7L014 1031 aaKnown RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 CALML6Q8TD86 181 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 CHAC2Q8WUX2 184 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 LCORQ96JN0 433 aaPredicted RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 SCYL1Q96KG9 808 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 FOXB1Q99853 325 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 XYLT2Q9H1B5 865 aa8.47□□□□□ -1.05
USP40-213ENST00000483216 H2AFY2Q9P0M6 372 aaPredicted RBP8.47□□□□□ -1.05
USP40-213ENST00000483216 MROH6A6NGR9 719 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 SOX5P35711 763 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 LSSP48449 732 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 KPNA1P52294 538 aaPredicted RBP8.46□□□□□ -1.06
USP40-213ENST00000483216 ALDH6A1Q02252 535 aaKnown RBP8.46□□□□□ -1.06
USP40-213ENST00000483216 KRT26Q7Z3Y9 468 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 KRTAP1-3Q8IUG1 177 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 PASD1Q8IV76 773 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 ZZZ3Q8IYH5 903 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 NUDT10Q8NFP7 164 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 FEZF2Q8TBJ5 459 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 ERCC4Q92889 916 aaPredicted RBP8.46□□□□□ -1.06
USP40-213ENST00000483216 NUDT11Q96G61 164 aa8.46□□□□□ -1.06
USP40-213ENST00000483216 OR10A5Q9H207 317 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms