RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CCDC144BQ3MJ40 725 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 ARSHQ5FYA8 562 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 MIS18BP1Q6P0N0 1132 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 SV2BQ7L1I2 683 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 SPNS2Q8IVW8 549 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 DHX37Q8IY37 1157 aaKnown RBP9.21□□□□□ -0.94
USP4-210ENST00000483212 SEPT1Q8WYJ6 367 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 DNAJC19Q96DA6 116 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 ERO1AQ96HE7 468 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 NACC1Q96RE7 527 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 WBP1LQ9NX94 342 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 GABBR1Q9UBS5 961 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 TCEAL9Q9UHQ7 104 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 NRBP1Q9UHY1 535 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 HOOK1Q9UJC3 728 aaKnown RBP9.21□□□□□ -0.94
USP4-210ENST00000483212 DBR1Q9UK59 544 aaKnown RBP9.21□□□□□ -0.94
USP4-210ENST00000483212 MAN1B1Q9UKM7 699 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 ZHX1Q9UKY1 873 aaPredicted RBP9.21□□□□□ -0.94
USP4-210ENST00000483212 DNM3Q9UQ16 869 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 SAMM50Q9Y512 469 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 EMSYQ7Z589 1322 aa9.21□□□□□ -0.94
USP4-210ENST00000483212 FSD2A1L4K1 749 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 FRMD3A2A2Y4 597 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 TMEM150BA6NC51 233 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 NKRFO15226 690 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP4-210ENST00000483212 GNRH1P01148 92 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 GH1P01241 217 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 XRCC6P12956 609 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP4-210ENST00000483212 TCF7P36402 384 aaPredicted RBP9.2□□□□□ -0.94
USP4-210ENST00000483212 RARRES1P49788 294 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 TRIM32Q13049 653 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 LAMC2Q13753 1193 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 KCNB1Q14721 858 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 MAP3K21Q5TCX8 1036 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 SWSAP1Q6NVH7 229 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 C1orf186Q6ZWK4 172 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 ANO5Q75V66 913 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 PPTC7Q8NI37 304 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 PIGOQ8TEQ8 1089 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 DDX12PQ92771 950 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 ATP6V0A1Q93050 837 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 SMARCE1Q969G3 411 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 CCDC34Q96HJ3 373 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 SPATA33Q96N06 139 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 GSDMAQ96QA5 445 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 CEP89Q96ST8 783 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 RUSC1Q9BVN2 902 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 BHMT2Q9H2M3 363 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 MLXIPQ9HAP2 919 aa9.2□□□□□ -0.94
USP4-210ENST00000483212 WDR81Q562E7 1941 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 NPHP3-ACAD11A0A0J9YXS1 232 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 BIN1O00499 593 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 RHOBTB3O94955 611 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 SMC2O95347 1197 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 RPN1P04843 607 aaKnown RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 CCDC192P0DO97 292 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 YWHABP31946 246 aaKnown RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 NLRP12P59046 1061 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 AMPD3Q01432 767 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 PRKCEQ02156 737 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 TNFAIP2Q03169 654 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 MAPK7Q13164 816 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 GIT2Q14161 759 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 DHX8Q14562 1220 aaKnown RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 STX1AQ16623 288 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 DPCR1Q3MIW9 517 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 KMT5BQ4FZB7 885 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 RINT1Q6NUQ1 792 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 SASS6Q6UVJ0 657 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 C11orf57Q6ZUT1 292 aaPredicted RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 UNC13DQ70J99 1090 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 PLPPR4Q7Z2D5 763 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 GPBP1Q86WP2 473 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 TRMT44Q8IYL2 757 aaKnown RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 TRIML1Q8N9V2 468 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 AFG1LQ8WV93 481 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 LENG1Q96BZ8 264 aaPredicted RBP9.19□□□□□ -0.94
USP4-210ENST00000483212 TSPY26PQ9H489 355 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 ZNF302Q9NR11 478 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 ANKEF1Q9NU02 776 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 TSKSQ9UJT2 592 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 Q9Y3F1 56 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 CEP350Q5VT06 3117 aa9.19□□□□□ -0.94
USP4-210ENST00000483212 PVALEFA0A1B0GWK0 134 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 A6NJR5 290 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 BACH1O14867 736 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 DKC1O60832 514 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP4-210ENST00000483212 OATP04181 439 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 MMP3P08254 477 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 AKR1A1P14550 325 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 ELNP15502 786 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 GUCY2CP25092 1073 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 HOXD10P28358 340 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 STAT5BP51692 787 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 PRMT2P55345 433 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 NPEPPSP55786 919 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 NKX3-2P78367 333 aa9.18□□□□□ -0.94
USP4-210ENST00000483212 CACNB2Q08289 660 aaPredicted RBP9.18□□□□□ -0.94
USP4-210ENST00000483212 TARBP2Q15633 366 aaKnown RBP9.18□□□□□ -0.94
USP4-210ENST00000483212 XKR3Q5GH77 459 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms