RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PLCG1P19174 1290 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 ATP4AP20648 1035 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 MARK3P27448 753 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 SYKP43405 635 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 NDUFA8P51970 172 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 CHMP4BP1P59074 171 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 PURAQ00577 322 aaKnown RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 TMEM119Q4V9L6 283 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 CCSAPQ6IQ19 270 aaPredicted RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 POTEGQ6S5H5 508 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 CXCL17Q6UXB2 119 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 CCDC73Q6ZRK6 1079 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 C4orf19Q8IY42 314 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 U2AF1L4Q8WU68 220 aaKnown RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 NACC1Q96RE7 527 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 TSEN34Q9BSV6 310 aaKnown RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 MTG1Q9BT17 334 aaPredicted RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 TUT1Q9H6E5 874 aaKnown RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 NRBP2Q9NSY0 501 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 ERAP1Q9NZ08 941 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 ZNF215Q9UL58 517 aaPredicted RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 OGDHLQ9ULD0 1010 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 HPSEQ9Y251 543 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 EVPLQ92817 2033 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 SCN10AQ9Y5Y9 1956 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 A0A087X0B3 334 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 KBTBD13C9JR72 458 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 ZBTB39O15060 712 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 LYPLA2O95372 231 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 STAT6P42226 847 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PSEN2P49810 448 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 SLC26A2P50443 739 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PSMC6P62333 389 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PRKCEQ02156 737 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PLCB4Q15147 1175 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 XKR3Q5GH77 459 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 IQUBQ8NA54 791 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PIGOQ8TEQ8 1089 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 KAT2BQ92831 832 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 DHX58Q96C10 678 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 PYM1Q9BRP8 204 aaKnown RBP13.68□□□□□ -0.22
SDC1-206ENST00000482879 CRISPLD2Q9H0B8 497 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 RNPEPQ9H4A4 650 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 DNM3Q9UQ16 869 aa13.68□□□□□ -0.22
SDC1-206ENST00000482879 MOXD2PA6NHM9 499 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 E9PMD0 336 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 DNM1LO00429 736 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 STBD1O95210 358 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 F2P00734 622 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 OATP04181 439 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 XRCC6P12956 609 aaKnown RBP eCLIP13.67□□□□□ -0.22
SDC1-206ENST00000482879 LIG1P18858 919 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 YWHABP31946 246 aaKnown RBP13.67□□□□□ -0.22
SDC1-206ENST00000482879 GJA8P48165 433 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 ACLYP53396 1101 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 MFSD10Q14728 455 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 KIAA0753Q2KHM9 967 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 OTUD6AQ7L8S5 288 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 KCNK18Q7Z418 384 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 KCTD17Q8N5Z5 321 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 ATP8B4Q8TF62 1192 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 BBXQ8WY36 941 aaPredicted RBP13.67□□□□□ -0.22
SDC1-206ENST00000482879 VTI1AQ96AJ9 217 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 FAM167AQ96KS9 214 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 KATNAL1Q9BW62 490 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 ANKEF1Q9NU02 776 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 SEPT9Q9UHD8 586 aaPredicted RBP13.67□□□□□ -0.22
SDC1-206ENST00000482879 TRPC6Q9Y210 931 aa13.67□□□□□ -0.22
SDC1-206ENST00000482879 TMEM150BA6NC51 233 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 HAS3O00219 553 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 HBP1O60381 514 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 CABYRO75952 493 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 ZNF202O95125 648 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 EYA4O95677 639 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 FAM160A1Q05DH4 1040 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 E2F4Q16254 413 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 NAALADL2Q58DX5 795 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 XKR9Q5GH70 373 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 COL13A1Q5TAT6 717 aaPredicted RBP13.66□□□□□ -0.22
SDC1-206ENST00000482879 ANO5Q75V66 913 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 FMR1NBQ8N0W7 255 aaPredicted RBP13.66□□□□□ -0.22
SDC1-206ENST00000482879 ENGASEQ8NFI3 743 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 LRRC15Q8TF66 581 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 RAD54LQ92698 747 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 CCDC43Q96MW1 224 aaKnown RBP13.66□□□□□ -0.22
SDC1-206ENST00000482879 BLOC1S4Q9NUP1 217 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 STK17AQ9UEE5 414 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 USP25Q9UHP3 1055 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 SERTAD1Q9UHV2 236 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 DBR1Q9UK59 544 aaKnown RBP13.66□□□□□ -0.22
SDC1-206ENST00000482879 PHF24Q9UPV7 400 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 ARID2Q68CP9 1835 aa13.66□□□□□ -0.22
SDC1-206ENST00000482879 MYH11P35749 1972 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 ARHGEF35A5YM69 484 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 NR1I2O75469 434 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 SSBP05455 408 aaKnown RBP eCLIP13.65□□□□□ -0.22
SDC1-206ENST00000482879 PLA2G4BP0C869 781 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 INSRRP14616 1297 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 PTMSP20962 102 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 NPEPPSP55786 919 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms