RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 C17orf75Q9HAS0 396 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 GABBR1Q9UBS5 961 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 DDX20Q9UHI6 824 aaKnown RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 MCM3APO60318 1980 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 COL1A2P08123 1366 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 MOXD2PA6NHM9 499 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 RRN3P2A6NIE6 340 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 DDX39AO00148 427 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 BACH1O14867 736 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 FOXN1O15353 648 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 DYNC1LI2O43237 492 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 CHMP2AO43633 222 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 GTPBP6O43824 516 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 DGAT1O75907 488 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 SMC2O95347 1197 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 CAVIN2O95810 425 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 MMP3P08254 477 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 HSPA1AP0DMV8 641 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 HSPA1BP0DMV9 641 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 CDC25AP30304 524 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 YWHABP31946 246 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 MDM2Q00987 491 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 KARSQ15046 597 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 LONRF3Q496Y0 759 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 ZNF484Q5JVG2 852 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 SPECC1Q5M775 1068 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 PRAMEF19Q5SWL8 479 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 PDXDC2PQ6P474 469 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 FAM43BQ6ZT52 329 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 RNF180Q86T96 592 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 CCDC60Q8IWA6 550 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 PIP4P2Q8N4L2 257 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 TRIML1Q8N9V2 468 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 ARRDC4Q8NCT1 418 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 SLC17A8Q8NDX2 589 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 KLHDC9Q8NEP7 349 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 TRPV1Q8NER1 839 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 ATP8B4Q8TF62 1192 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 KCNN1Q92952 543 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 GJA10Q969M2 543 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 CCDC47Q96A33 483 aaKnown RBP9.21□□□□□ -0.94
SYNE1-225ENST00000481502 ARMC5Q96C12 935 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 NUP62CLQ9H1M0 184 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 BLOC1S4Q9NUP1 217 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 RGL1Q9NZL6 768 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 PKD2L1Q9P0L9 805 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 PTCH2Q9Y6C5 1203 aa9.21□□□□□ -0.94
SYNE1-225ENST00000481502 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 POTEB3A0JP26 581 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PP2D1A8MPX8 630 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 H3BRB1 525 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 MAGEB2O15479 319 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 ADAMTS4O75173 837 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 STBD1O95210 358 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 F2P00734 622 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 OATP04181 439 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 INHAP05111 366 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 LGALS2P05162 132 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PLA2G4BP0C869 781 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 ELNP15502 786 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 GUCY2CP25092 1073 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 RFC5P40937 340 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PPP1R2P41236 205 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 SLC12A3P55017 1021 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 RTP1P59025 263 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 CDC42EP1Q00587 391 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PTPN11Q06124 597 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PSMD2Q13200 908 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 CTTNQ14247 550 aaKnown RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 KCNB1Q14721 858 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 POSTNQ15063 836 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 TARBP2Q15633 366 aaKnown RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 FSCN1Q16658 493 aaKnown RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 SLC9C1Q4G0N8 1177 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 POTEBQ6S5H4 581 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PDILTQ8N807 584 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 MCPH1Q8NEM0 835 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 AFG1LQ8WV93 481 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 GLG1Q92896 1179 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 DHX58Q96C10 678 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PAGE5Q96GU1 130 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PCYT2Q99447 389 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 C16orf70Q9BSU1 422 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 TUT1Q9H6E5 874 aaKnown RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 XPNPEP3Q9NQH7 507 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 PAK6Q9NQU5 681 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-225ENST00000481502 RMND1Q9NWS8 449 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 KIAA1468Q9P260 1216 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 SEL1LQ9UBV2 794 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 SERTAD1Q9UHV2 236 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 TUBE1Q9UJT0 475 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 ODF2LQ9ULJ1 636 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 LOXHD1Q8IVV2 1947 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 NRCAMQ92823 1304 aa9.2□□□□□ -0.94
SYNE1-225ENST00000481502 A0A087X0B3 334 aa9.19□□□□□ -0.94
SYNE1-225ENST00000481502 ARHGEF35A5YM69 484 aa9.19□□□□□ -0.94
SYNE1-225ENST00000481502 HAS3O00219 553 aa9.19□□□□□ -0.94
SYNE1-225ENST00000481502 ZNF862O60290 1169 aa9.19□□□□□ -0.94
SYNE1-225ENST00000481502 MAPTP10636 758 aaKnown RBP9.19□□□□□ -0.94
SYNE1-225ENST00000481502 GNAT1P11488 350 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms