RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PMS2P54278 862 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 PIGWQ7Z7B1 504 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 SPDYE1Q8NFV5 336 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 DYNLL2Q96FJ2 89 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 L3MBTL3Q96JM7 780 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 FGFBP2Q9BYJ0 223 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 NSRP1Q9H0G5 558 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 SLITRK6Q9H5Y7 841 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 PRDM11Q9NQV5 511 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 DUOX1Q9NRD9 1551 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 EVI5O60447 810 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 USP17L8P0C7I0 530 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 SLC9A1P19634 815 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 SUSD4Q5VX71 490 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 PNMA5Q96PV4 448 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 NAGPAQ9UK23 515 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 KAT6BQ8WYB5 2073 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 PCP11498 1178 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 KRT13P13646 458 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 CALCRLQ16602 461 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 SOGA3Q5TF21 947 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 OTUD6AQ7L8S5 288 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 LRRC57Q8N9N7 239 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 ZNF384Q8TF68 577 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 PIGBQ92521 554 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 MKNK2Q9HBH9 465 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 RIC8AQ9NPQ8 531 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 TMEM260Q9NX78 707 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 MAD2L2Q9UI95 211 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 TRIM33Q9UPN9 1127 aa20.42■□□□□ 0.86
CCDC88B-207ENST00000479965 CCDC169A6NNP5 214 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 KRT16P08779 473 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 NCALDP61601 193 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 ZNF211Q13398 564 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 RIPK1Q13546 671 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 UBAP2Q5T6F2 1119 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 THEMIS2Q5TEJ8 643 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 KRT25Q7Z3Z0 450 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 GJA10Q969M2 543 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 CENPTQ96BT3 561 aa20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 CRNKL1Q9BZJ0 848 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 DBR1Q9UK59 544 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 ZNF268Q14587 947 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 EPS8L3Q8TE67 593 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-207ENST00000479965 CES2O00748 559 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 MARCH6O60337 910 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 FGRP09769 529 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 DR1Q01658 176 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 COBLL1Q53SF7 1204 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 RAB17Q9H0T7 212 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 ADAM7Q9H2U9 754 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 IL17RBQ9NRM6 502 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 FGFR1OP2Q9NVK5 253 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 AIPL1Q9NZN9 384 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 DAAM1Q9Y4D1 1078 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 AP1G2O75843 785 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 RARAP10276 462 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 IL2RBP14784 551 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 MMP13P45452 471 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 KCNH2Q12809 1159 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 COASYQ13057 564 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 FAM26FQ5R3K3 315 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 MIS18BP1Q6P0N0 1132 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 FBXO25Q8TCJ0 367 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 U2AF1L4Q8WU68 220 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 RNF25Q96BH1 459 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 AFF2P51816 1311 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 PPFIA2O75334 1257 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 ABCB4P21439 1286 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 FGFR4P22455 802 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 TMEM266Q2M3C6 531 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 TCERG1LQ5VWI1 586 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 KRT79Q5XKE5 535 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 PNMA3Q9UL41 463 aa20.4■□□□□ 0.86
CCDC88B-207ENST00000479965 KLRF2D3W0D1 207 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 SMNDC1O75940 238 aaKnown RBP eCLIP20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ADAM9Q13443 819 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 CCDC25Q86WR0 208 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 CEP120Q8N960 986 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 RAD54LQ92698 747 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 SH3GL3Q99963 347 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 PLCD4Q9BRC7 762 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 PABPC3Q9H361 631 aaKnown RBP20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 C6orf50Q9HD87 102 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 OSGEPQ9NPF4 335 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 H2AFZP0C0S5 128 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 GNAQP50148 359 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 TAF11Q15544 211 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 C11orf91Q3C1V1 193 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 CCDC152Q4G0S7 254 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 DCAF17Q5H9S7 520 aaPredicted RBP20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ANKRD20A2Q5SQ80 823 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ANKRD20A1Q5TYW2 823 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ANKRD20A3Q5VUR7 823 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 H2AFVQ71UI9 128 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ATP8B4Q8TF62 1192 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ACSBG1Q96GR2 724 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 SEMA4AQ9H3S1 761 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 ARHGEF10LQ9HCE6 1279 aa20.39■□□□□ 0.85
CCDC88B-207ENST00000479965 STK17AQ9UEE5 414 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms