RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 TRIM59Q8IWR1 403 aa16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 NEK11Q8NG66 645 aa16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 IRX2Q9BZI1 471 aaPredicted RBP16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 ADARB2Q9NS39 739 aaKnown RBP16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 TYW1Q9NV66 732 aaKnown RBP16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 ZNF214Q9UL59 606 aaPredicted RBP16.95■□□□□ 0.3
RPUSD3-215ENST00000475470 COL11A1P12107 1806 aaPredicted RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 TESPA1A2RU30 521 aaPredicted RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 TMEM132BQ14DG7 1078 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 SMCR8Q8TEV9 937 aaPredicted RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 DCPSQ96C86 337 aaKnown RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 HOXC10Q9NYD6 342 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 RNF181Q9P0P0 153 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 SEL1LQ9UBV2 794 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 FAM184BQ9ULE4 1060 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 ODF2LQ9ULJ1 636 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 RPL13P26373 211 aaKnown RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 CYLC1P35663 651 aaPredicted RBP16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 ZNF710Q8N1W2 664 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 CCDC155Q8N6L0 562 aa16.94■□□□□ 0.3
RPUSD3-215ENST00000475470 RLFQ13129 1914 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 EPHB6O15197 1021 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 EIF3DO15371 548 aaKnown RBP eCLIP16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 CCND2P30279 289 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 NMT1P30419 496 aaKnown RBP16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 MAP3K9P80192 1104 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 NCBP1Q09161 790 aaKnown RBP16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 PLS1Q14651 629 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 XRRA1Q6P2D8 792 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 RBM46Q8TBY0 533 aaKnown RBP16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 TEX13BQ9BXU2 312 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 NHEJ1Q9H9Q4 299 aaPredicted RBP16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 TCEAL9Q9UHQ7 104 aa16.93■□□□□ 0.3
RPUSD3-215ENST00000475470 GUCY2CP25092 1073 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 QARSP47897 775 aaKnown RBP16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 VGLL4Q14135 290 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 NAA30Q147X3 362 aaPredicted RBP16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 STXBP4Q6ZWJ1 553 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 CACNA2D4Q7Z3S7 1137 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 SULF1Q8IWU6 871 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 FAM178BQ8IXR5 827 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 CCDC170Q8IYT3 715 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 LOXHD1Q8IVV2 1947 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ATP2A1O14983 1001 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 IPO7O95373 1038 aaKnown RBP16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 NR3C1P04150 777 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 NR3C2P08235 984 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ZNF131P52739 623 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 KRT83P78385 493 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 CDK17Q00537 523 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 KCNA1Q09470 495 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 KCNMA1Q12791 1236 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ZNF569Q5MCW4 686 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ODR4Q5SWX8 454 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 PADI6Q6TGC4 694 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 DLK2Q6UY11 383 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 FRMD5Q7Z6J6 570 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ARMCX3Q9UH62 379 aaPredicted RBP16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 PLAGL2Q9UPG8 496 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 SNCAIPQ9Y6H5 919 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ASTN1O14525 1302 aa16.92■□□□□ 0.3
RPUSD3-215ENST00000475470 ATP9AO75110 1047 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 ZC2HC1CQ53FD0 456 aaPredicted RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 SH3D19Q5HYK7 790 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 RRAGAQ7L523 313 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 VSIG10LQ86VR7 867 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 NSUN6Q8TEA1 469 aaKnown RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 EDEM3Q9BZQ6 932 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 ACAD9Q9H845 621 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 REXO2Q9Y3B8 237 aaKnown RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 SPDYE16A6NNV3 312 aaPredicted RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 PPP1R12BO60237 982 aaPredicted RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 HIP1RO75146 1068 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 HNRNPH3P31942 346 aaKnown RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 KCNH2Q12809 1159 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 ZNF720Q7Z2F6 126 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 MTERF4Q7Z6M4 381 aaKnown RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 NLRX1Q86UT6 975 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 ANKRD7Q92527 254 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 DBR1Q9UK59 544 aaKnown RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 CSADQ9Y600 493 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 V9GYY5 206 aaPredicted RBP16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 MYPNQ86TC9 1320 aa16.91■□□□□ 0.3
RPUSD3-215ENST00000475470 ADM5C9JUS6 153 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 CLIC2O15247 247 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 ARHGAP25P42331 645 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 JAK3P52333 1124 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 KRT76Q01546 638 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 CCDC42Q96M95 316 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 CCDC43Q96MW1 224 aaKnown RBP16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 LSM14BQ9BX40 385 aaKnown RBP16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 LRRC53A6NM62 1247 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 WDR64B1ANS9 1081 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 EIF3CLB5ME19 914 aaKnown RBP16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 TGFB1I1O43294 461 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 ABL1P00519 1130 aa16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 EPB41P11171 864 aaKnown RBP16.9■□□□□ 0.3
RPUSD3-215ENST00000475470 SFNP31947 248 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms