RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 TMEM62Q0P6H9 643 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 SCRN1Q12765 414 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 NTRK3Q16288 839 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 PDXDC2PQ6P474 469 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 TSHZ1Q6ZSZ6 1077 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 NIPA1Q7RTP0 329 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 PLPPR4Q7Z2D5 763 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 RPAINQ86UA6 219 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 FIBCD1Q8N539 461 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 ZNF577Q9BSK1 485 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 GINS2Q9Y248 185 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 SAMM50Q9Y512 469 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 XIRP2A4UGR9 3374 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 ESYT2A0FGR8 921 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 IPO5O00410 1097 aaKnown RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 MEIS1O00470 390 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 PFKFB2O60825 505 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 DEXIO95424 95 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 RBM25P49756 843 aaKnown RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 CLK2P49760 499 aaKnown RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 HTRA4P83105 476 aaPredicted RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 PAK2Q13177 524 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 ITGB3BPQ13352 177 aaPredicted RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 LPIN1Q14693 890 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 PLCB4Q15147 1175 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 NECAB1Q8N987 351 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 TRAPPC12Q8WVT3 735 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 UIMC1Q96RL1 719 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 ZNF302Q9NR11 478 aa17.14■□□□□ 0.33
VARS-223ENST00000474643 PRRC2BQ5JSZ5 2229 aaKnown RBP17.14■□□□□ 0.33
VARS-223ENST00000474643 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.13■□□□□ 0.33
VARS-223ENST00000474643 MBLAC1A4D2B0 266 aaPredicted RBP17.13■□□□□ 0.33
VARS-223ENST00000474643 CTNNB1P35222 781 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 KCNQ1P51787 676 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 NLRP5P59047 1200 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 PKN1Q16512 942 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 EPC2Q52LR7 807 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 PRR16Q569H4 304 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 FBXO47Q5MNV8 452 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 EP400NLQ6ZTU2 488 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 TRMT1LQ7Z2T5 733 aaKnown RBP17.13■□□□□ 0.33
VARS-223ENST00000474643 FTHL17Q9BXU8 183 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 ZMYND12Q9H0C1 365 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 TBC1D22BQ9NU19 505 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 VPS54Q9P1Q0 977 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 TRPV2Q9Y5S1 764 aa17.13■□□□□ 0.33
VARS-223ENST00000474643 TTC28Q96AY4 2481 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 FAM86B1E9PN63 330 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 RBAK-RBAKDNI3L0D1 243 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 HBP1O60381 514 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 LPXNO60711 386 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 FAM86B2P0C5J1 330 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 CD52P31358 61 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 GPM6BQ13491 265 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 BTG3Q14201 252 aaPredicted RBP17.12■□□□□ 0.33
VARS-223ENST00000474643 RABEP1Q15276 862 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 ME3Q16798 604 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 TIGD5Q53EQ6 642 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 MARCH8Q5T0T0 291 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 TMEM192Q8IY95 271 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 ZBTB10Q96DT7 871 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 PCYT2Q99447 389 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 OSBPL7Q9BZF2 842 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 LIMCH1Q9UPQ0 1083 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 RWDD3Q9Y3V2 267 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 PCDHA2Q9Y5H9 948 aa17.12■□□□□ 0.33
VARS-223ENST00000474643 ST18O60284 1047 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 LARGE1O95461 756 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 PSAPP07602 524 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 CYP3A4P08684 503 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 XBP1P17861 261 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 KRT76Q01546 638 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 MGAT3Q09327 533 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 SWSAP1Q6NVH7 229 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 SMAP1Q8IYB5 467 aaPredicted RBP17.11■□□□□ 0.33
VARS-223ENST00000474643 NME8Q8N427 588 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 SP7Q8TDD2 431 aaPredicted RBP17.11■□□□□ 0.33
VARS-223ENST00000474643 RASGRP4Q8TDF6 673 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 ATP8B4Q8TF62 1192 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 GTF3C6Q969F1 213 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 LRFN2Q9ULH4 789 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 SIP14410 1827 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 ADGRA3Q8IWK6 1321 aa17.11■□□□□ 0.33
VARS-223ENST00000474643 SMIM35A0A1B0GVV1 85 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 CCNE2O96020 404 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 STAG3L1P0CL83 205 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 KLRC1P26715 233 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 NFX1Q12986 1120 aaKnown RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 MKRN4PQ13434 485 aaPredicted RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 ODR4Q5SWX8 454 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 ZNF746Q6NUN9 644 aaPredicted RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 MTHFD1LQ6UB35 978 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 ABHD15Q6UXT9 468 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 CCDC60Q8IWA6 550 aaPredicted RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 METTL13Q8N6R0 699 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 WASF1Q92558 559 aa17.1■□□□□ 0.33
VARS-223ENST00000474643 MRPL38Q96DV4 380 aaKnown RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 C11orf84Q9BUA3 381 aaPredicted RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 CELF4Q9BZC1 486 aaKnown RBP17.1■□□□□ 0.33
VARS-223ENST00000474643 SH3GLB2Q9NR46 395 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms