RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 SPIRE1Q08AE8 756 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 RPS6KA1Q15418 735 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 MAATS1Q7Z4T9 603 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 REEP2Q9BRK0 252 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 HDAC9Q9UKV0 1011 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 PLAAQ9Y263 795 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 RBM46Q8TBY0 533 aaKnown RBP23.11■■□□□ 1.29
COL18A1-207ENST00000473212 ATP6V1G3Q96LB4 118 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 TMEM59LQ9UK28 342 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 LY75O60449 1722 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 SFI1A8K8P3 1242 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 HLTFQ14527 1009 aaKnown RBP eCLIP23.1■■□□□ 1.29
COL18A1-207ENST00000473212 DCAF17Q5H9S7 520 aaPredicted RBP23.1■■□□□ 1.29
COL18A1-207ENST00000473212 GPATCH4Q5T3I0 446 aaKnown RBP23.1■■□□□ 1.29
COL18A1-207ENST00000473212 B4GALNT4Q76KP1 1039 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 FAM86B1E9PN63 330 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 FAM86B2P0C5J1 330 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 SPATA31C1P0DKV0 1188 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 ERVK-9P63128 1117 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 GIT2Q14161 759 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 CEP85LQ5SZL2 805 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 FBXW10Q5XX13 1052 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 MMS22LQ6ZRQ5 1243 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 IRF2BP2Q7Z5L9 587 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 EPN3Q9H201 632 aa23.1■■□□□ 1.29
COL18A1-207ENST00000473212 TAF1DQ9H5J8 278 aaPredicted RBP23.1■■□□□ 1.29
COL18A1-207ENST00000473212 DDTLA6NHG4 134 aaPredicted RBP23.09■■□□□ 1.29
COL18A1-207ENST00000473212 PPEF1O14829 653 aaPredicted RBP23.09■■□□□ 1.29
COL18A1-207ENST00000473212 CETN3O15182 167 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 CLIC2O15247 247 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 CLSTN1O94985 981 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 GCFC2P16383 781 aaKnown RBP23.09■■□□□ 1.29
COL18A1-207ENST00000473212 AKAP3O75969 853 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 KIF4AO95239 1232 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 HOXA13P31271 388 aaPredicted RBP23.09■■□□□ 1.29
COL18A1-207ENST00000473212 HSPA9P38646 679 aaKnown RBP23.09■■□□□ 1.29
COL18A1-207ENST00000473212 ARHGAP4P98171 946 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 ETNPPLQ8TBG4 499 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 SPAG5Q96R06 1193 aa23.09■■□□□ 1.29
COL18A1-207ENST00000473212 CEP104O60308 925 aa23.08■■□□□ 1.29
COL18A1-207ENST00000473212 SIAH1Q8IUQ4 282 aa23.08■■□□□ 1.29
COL18A1-207ENST00000473212 ZC3H3Q8IXZ2 948 aaKnown RBP23.08■■□□□ 1.29
COL18A1-207ENST00000473212 ISCUQ9H1K1 167 aa23.08■■□□□ 1.29
COL18A1-207ENST00000473212 CENPHQ9H3R5 247 aa23.08■■□□□ 1.29
COL18A1-207ENST00000473212 FRMD3A2A2Y4 597 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 PPP1R37O75864 691 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 UCHL3P15374 230 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 SEC24CP53992 1094 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 TCERG1LQ5VWI1 586 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 NAA35Q5VZE5 725 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 DDX42Q86XP3 938 aaKnown RBP eCLIP23.08■■□□□ 1.28
COL18A1-207ENST00000473212 LENG9Q96B70 501 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 AP1M1Q9BXS5 423 aa23.08■■□□□ 1.28
COL18A1-207ENST00000473212 GDF11O95390 407 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 HOXA10P31260 410 aaPredicted RBP23.07■■□□□ 1.28
COL18A1-207ENST00000473212 USP11P51784 963 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 PTGISQ16647 500 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 EMC10Q5UCC4 262 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 RUSC1Q9BVN2 902 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 RGL1Q9NZL6 768 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 SWAP70Q9UH65 585 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 BTNL10A8MVZ5 291 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 HMGB1P1B2RPK0 211 aaPredicted RBP23.07■■□□□ 1.28
COL18A1-207ENST00000473212 POLRMTO00411 1230 aaKnown RBP23.07■■□□□ 1.28
COL18A1-207ENST00000473212 PON1P27169 355 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 ECHS1P30084 290 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 HPDP32754 393 aaPredicted RBP23.07■■□□□ 1.28
COL18A1-207ENST00000473212 ITGB3BPQ13352 177 aaPredicted RBP23.07■■□□□ 1.28
COL18A1-207ENST00000473212 EDRF1Q3B7T1 1238 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 SLFN13Q68D06 897 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 KSR1Q8IVT5 923 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 DBNDD1Q9H9R9 158 aa23.07■■□□□ 1.28
COL18A1-207ENST00000473212 ATAD5Q96QE3 1844 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 ZBTB39O15060 712 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 KIAA0754O94854 1291 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 MDH1P40925 334 aaKnown RBP23.06■■□□□ 1.28
COL18A1-207ENST00000473212 KIAA0825Q8IV33 1275 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 OR2W6PQ8NHA6 318 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 ZNF473Q8WTR7 871 aaKnown RBP23.06■■□□□ 1.28
COL18A1-207ENST00000473212 SCFD2Q8WU76 684 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 ZC3H12CQ9C0D7 883 aaKnown RBP23.06■■□□□ 1.28
COL18A1-207ENST00000473212 LTBP1Q14766 1721 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 CES2O00748 559 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 HSD17B3P37058 310 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 JAG1P78504 1218 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 C10orf76Q5T2E6 689 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 SUGP1Q8IWZ8 645 aaKnown RBP23.06■■□□□ 1.28
COL18A1-207ENST00000473212 OTUD6BQ8N6M0 293 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 LRRC57Q8N9N7 239 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 CRYGNQ8WXF5 182 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 PBKQ96KB5 322 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 COA1Q9GZY4 146 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 BHMT2Q9H2M3 363 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 TMBIM4Q9HC24 238 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 ARMCX3Q9UH62 379 aaPredicted RBP23.06■■□□□ 1.28
COL18A1-207ENST00000473212 NAGPAQ9UK23 515 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 CAPN7Q9Y6W3 813 aa23.06■■□□□ 1.28
COL18A1-207ENST00000473212 EML1O00423 815 aa23.05■■□□□ 1.28
COL18A1-207ENST00000473212 PPP4R3CPQ6ZMV5 832 aa23.05■■□□□ 1.28
COL18A1-207ENST00000473212 SH3BP5LQ7L8J4 393 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms